Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24330 979 / 0 ARM repeat superfamily protein (.1) AT1G27910 965 / 0 ATPUB45 ARABIDOPSIS THALIANA PLANT U-BOX 45, plant U-box 45 (.1) AT1G67530 962 / 0 ARM repeat superfamily protein (.1.2) AT2G28830 206 / 2e-55 AtPUB12 PLANT U-BOX 12 (.1) AT3G46510 197 / 1e-53 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT4G36550 177 / 1e-46 ARM repeat superfamily protein (.1) AT5G42340 171 / 1e-44 PUB15 Plant U-Box 15 (.1) AT1G23030 145 / 2e-36 PUB11 ARM repeat superfamily protein (.1) AT3G07360 133 / 6e-33 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT1G29340 126 / 9e-30 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011370 [exp] 1446 / 0 AT1G24330 1000 / 0.0 ARM repeat superfamily protein (.1) Lus10015801 [exp] 1193 / 0 AT1G24330 1027 / 0.0 ARM repeat superfamily protein (.1) Lus10037005 [exp] 1189 / 0 AT1G24330 1029 / 0.0 ARM repeat superfamily protein (.1) Lus10028307 [exp] 281 / 1e-83 AT4G36550 417 / 1e-135 ARM repeat superfamily protein (.1) Lus10041754 [exp] 279 / 1e-82 AT4G36550 404 / 6e-131 ARM repeat superfamily protein (.1) Lus10007511 [exp] 188 / 2e-50 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10037970 [exp] 175 / 4e-46 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10040834 [exp] 174 / 2e-45 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 171 / 8e-45 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G058000 [exp] 1095 / 0 AT1G24330 1079 / 0.0 ARM repeat superfamily protein (.1) Potri.008G177100 [exp] 1070 / 0 AT1G24330 1025 / 0.0 ARM repeat superfamily protein (.1) Potri.007G023700 [exp] 325 / 2e-99 AT1G67530 328 / 9e-101 ARM repeat superfamily protein (.1.2) Potri.005G122100 [exp] 308 / 1e-92 AT4G36550 441 / 2e-143 ARM repeat superfamily protein (.1) Potri.005G228100 [exp] 298 / 9e-90 AT4G36550 329 / 5e-102 ARM repeat superfamily protein (.1) Potri.002G009900 [exp] 197 / 6e-54 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.001G238500 [exp] 182 / 1e-48 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 181 / 2e-48 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.009G029600 [exp] 150 / 8e-38 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G128600 [exp] 135 / 5e-33 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain CL0020 [flax] [poplar] TPR PF05804 [flax] [poplar] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Lus10006427 pacid=23171950 polypeptide=Lus10006427 locus=Lus10006427.g ID=Lus10006427.BGIv1.0 annot-version=v1.0 ATGGATATTTCCGAGGTTGAAGAAAGTCTTTTTGCAGCTAGTGACGCCAAGTTGCATGGCGAGATGTGCAAAGCTCTCTCAACAATTTATTGCAAGATCT CGTCTGTTTTCCCCTCATTGGAAGCAGCTCGGCCTAGGAGCAAGTCCGGCATACAGGCACTATGTTCACTCCATATAGCACTTGAAAAGGCGAAAAATGT TCTTCAGCATTGTTCAGAATGCAGCAAACTCTACTTGGCTATAACTGGAGATTCCGTCCTTCTAAAATTTGAAAAAGCAAGATCTGCCCTTGTTGACGGC CTTAGACGGGTTGAAGATATTGTTCCGCAATCTATTGGTTGTGAAATTTTGGAGATTATAGATGAACTGGAGGGGATGAGATTTGCACTTGATCCATCAG AGAAGCAAACCGGCGAGGAGATAGTTGCCTTGCTTCAGCAAGGCAGAAAATTCGACAATTGCAATGATGGAAACGAGCCCGAGTCCTTTCACCAAGCTGT TACTAAGCTCGGTATCACGTCTTCCCGGACAGCTCTCACGGAGAGGAGGTGTCTGAAAAAACTAATCGACAGAGCTCGTGTGGAGGAAGACAAGCGGAAG GAATCAATTGTGGCGTATCTCTTACATCTTATGAGGAAGTATTCCAAGCTATTCAGAAGTGACCTCACAGATGATAATGATTCACAGGGAGGCTCGAATC CTTGTTCTCCCACTGTTTTCGGTTCGCTCGAGGATAATCATAATCATGCATTTGACCGCCATCTATCAAAGATTAGTTCTTTCAACTTCAAGACGAATTT CAGAAGGTCCGGGCAGATGGGTATTCCACCGGAGGAGTTGAGGTGTCCGATATCGTTGCAGCTTATGTACGATCCGGTCATCATTGCTTCGGGGCAAACG TACGAGAGGATTTGTATCGAGAAATGGTTCAGCGACGGACACGAGACTTGTCCCAAGACTCGACAACAGCTACCTCATTTGTCGTTGACTCCGAATTACT GCGTCAAAGGTCTTATCACTACTTGGTGTGAGCAGAATGGAGTTCCGGTTCCTGAGGCTCCTCCTGAATCTCTAGACCTGAATTACTGGAGGCTGGTGCT ATCCCAGTCCGACGACAAGGTCAATTCCGACGTAACGAAGAGCGCAAAAGTGGTTCCGTTAGATGAGAGCGGAACCATCGAGGAGGTTGATGAAAGCGAG ATGGAAAGTGAAGATAAACCTGAGGAATATTTCGAGGTTGATTCGGTGACAAGGTATCAGGAGCTTCTGGCCATACTGAACGATGAGAACGAAAAGGTGC AGGAAAAGTGCAAGAGAGTTGAAGAAGTGAGGTTCTTGCTGAAAGATGATGAAGAAGCTAGGATATACATGGGTGCTAATGGATTCGTTGAAGCGCTTAT GCAGTTTCTTCAGTCGGCAGTCCGTTCCAGCGATGGATCGGCTCAGGACAACGGGGCCATGGCACTGTTTAACCTTGCAGTCAACAACAACAGGAATAAA GAAATGATGTTAGCTGCCGGAATCATCCCACTGTTGGAAGAAATGATCTCCTGCTCCGACTCCCACGCATCTGCAACTGCTCTCTATCTAAACCTCTCCT GTCTCGGAGCCGCCAAGTCAATCATCGGATCAAGTCTAGCCGTCCCGTTCCTAATCCAGATCCTCCAAGGACAATATCCAACTCAATGCAAACTCGACGC CCTACACGCCCTCTTCAATCTCTCATCCAGTCCATCCAACATCACAAACCTCCTCTCCGCCGGCATCATCAACGGCCTACAATCCCTCCTCTCTTCCCCC AGCAATGATCATCATTCCTGGACAGAAAAATCCATCGCAGTAATCATCAACCTGTGCTCCAATCAATCAGGTAAAACAGAGATCGTAGCATGTTCCGACC TGATCAGCGCCATAGCATCTTTGCTAGACGCCGACGAACTAATCGAGCAAGAACAAGCGGTCGTGTGTCTCTACATGCTCTGCAACGGCGACGAAGTGTG CAGTCATATGGTCCTACAAGAAGGGGTTATTCCTTCACTAGTCTCCATCTCCGTCAACGGCACCACCAGGGGGAAAGACAAGGCGCAGAAGCTTCTAATG CTGTTCCGTGAACAGCGTCAGCAGCAAAAGCAAGTACTACAGCCGCCTCCTCTTCTCGCTCCCTCTACCGAAATGTCGCTGGTACGAGCTAGTAGCTCTA GACCAGCGGAGAATCCAGAAAAGAAGCCGATAAGCAAAGCGGCGTCGAAGAGGAAGATGAGTAGAGCCTTCAGCTTGTTATGGAAGAACAAGAGCTTCTC ACTTTATCCATTCTAA
AA sequence Show only first row Show all	>Lus10006427 pacid=23171950 polypeptide=Lus10006427 locus=Lus10006427.g ID=Lus10006427.BGIv1.0 annot-version=v1.0 MDISEVEESLFAASDAKLHGEMCKALSTIYCKISSVFPSLEAARPRSKSGIQALCSLHIALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKARSALVDG LRRVEDIVPQSIGCEILEIIDELEGMRFALDPSEKQTGEEIVALLQQGRKFDNCNDGNEPESFHQAVTKLGITSSRTALTERRCLKKLIDRARVEEDKRK ESIVAYLLHLMRKYSKLFRSDLTDDNDSQGGSNPCSPTVFGSLEDNHNHAFDRHLSKISSFNFKTNFRRSGQMGIPPEELRCPISLQLMYDPVIIASGQT YERICIEKWFSDGHETCPKTRQQLPHLSLTPNYCVKGLITTWCEQNGVPVPEAPPESLDLNYWRLVLSQSDDKVNSDVTKSAKVVPLDESGTIEEVDESE MESEDKPEEYFEVDSVTRYQELLAILNDENEKVQEKCKRVEEVRFLLKDDEEARIYMGANGFVEALMQFLQSAVRSSDGSAQDNGAMALFNLAVNNNRNK EMMLAAGIIPLLEEMISCSDSHASATALYLNLSCLGAAKSIIGSSLAVPFLIQILQGQYPTQCKLDALHALFNLSSSPSNITNLLSAGIINGLQSLLSSP SNDHHSWTEKSIAVIINLCSNQSGKTEIVACSDLISAIASLLDADELIEQEQAVVCLYMLCNGDEVCSHMVLQEGVIPSLVSISVNGTTRGKDKAQKLLM LFREQRQQQKQVLQPPPLLAPSTEMSLVRASSSRPAENPEKKPISKAASKRKMSRAFSLLWKNKSFSLYPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24330			ARM repeat superfamily protein...		Lus10006427 [exp]	0	1
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10030730 [exp]	8.3	0.7765
AT1G14780			MAC/Perforin domain-containing...		Lus10037426 [exp]	9.4	0.8261
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10011113 [exp]	14.0	0.7796
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10017277 [exp]	17.9	0.7667
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10043233 [exp]	23.7	0.7722
AT3G27880			Protein of unknown function (D...		Lus10014541 [exp]	25.1	0.7652
AT3G15760			unknown protein		Lus10019413 [exp]	25.5	0.7492
AT1G55915			zinc ion binding (.1)		Lus10037337 [exp]	26.5	0.7551
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10020283 [exp]	29.7	0.7530
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	33.2	0.7713

Compare expression of checked genes

Lus10006427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.