Plant FIBer expression Database

Lus10006428 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67540 58 / 3e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037003
[exp]
146 / 5e-43 AT1G67540 64 / 1e-11 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G177300
[exp]
126 / 1e-34 AT1G67540 84 / 1e-18 unknown protein
Potri.010G057800
[exp]
117 / 2e-31 AT1G67540 87 / 1e-19 unknown protein
PFAM info
Representative CDS sequence
>Lus10006428 pacid=23172000 polypeptide=Lus10006428 locus=Lus10006428.g ID=Lus10006428.BGIv1.0 annot-version=v1.0
ATGGATTCCAGGAAGCAGCCATTGCATACCTGTGCAGTTTCGCTCCTGGAAGTTGCGGACAGAGCATGCAAAACAGCTTCATTACCTTCTTCTTCGTCGA
TTATCTGCGCGTTCCAATGTCGGTTACTGGCAATTCTGGCGTTTGTGGACGGTTGGATATTAAGCTTGGAGAGTTTGGCGGAAGCAATTTGTCCTCCATT
GAAGCGATTGTTCGACAGGATTGATGAGCTTGTCAGGACGGCAGAGGGATTACCTTTGAAGTTTGATGACGGGATTGAAAAGATTCCGGCTTTGGTTCAG
CAGGTCCCGTTTCTGGAATGGGCGTTGGTTTGCTCGATTTCGTGGCTCGAGTGGTTGCTGTCTGTTTTGACCGATTTGGGGATGAGAGTTAAGGAGAAGG
AGATCAATGTGGTTGATGTCAATTACAGTAAAAGAGCAGAATTTCCTGATGATCAGACTGGTAATCCATTTCCTGATGATCAGACGGGTAAACCGGAAAC
TGTTCAGGAAATTGATCAGGAATTCGCTAGCAACAATGACGGGAAAGACAGTGGAACAGACGACGAGCACGCATTAACAAGAAACTGTGAGCTAAAAATC
GCGGCAGGTATTCAAGATAAGGAATTCACATAA
AA sequence
>Lus10006428 pacid=23172000 polypeptide=Lus10006428 locus=Lus10006428.g ID=Lus10006428.BGIv1.0 annot-version=v1.0
MDSRKQPLHTCAVSLLEVADRACKTASLPSSSSIICAFQCRLLAILAFVDGWILSLESLAEAICPPLKRLFDRIDELVRTAEGLPLKFDDGIEKIPALVQ
QVPFLEWALVCSISWLEWLLSVLTDLGMRVKEKEINVVDVNYSKRAEFPDDQTGNPFPDDQTGKPETVQEIDQEFASNNDGKDSGTDDEHALTRNCELKI
AAGIQDKEFT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G67540 unknown protein Lus10006428
[exp]
0 1
AT2G44820 unknown protein Lus10026825
[exp]
4.2 0.8205
Lus10021453
[exp]
7.1 0.7818
Lus10015310
[exp]
8.5 0.7739
AT4G36950 MAPKKK21 mitogen-activated protein kina... Lus10034246
[exp]
10.2 0.7594
Lus10022658
[exp]
10.7 0.6423
AT1G30370 DLAH DAD1-like acylhydrolase, alpha... Lus10038525
[exp]
14.0 0.7014
AT5G19730 Pectin lyase-like superfamily ... Lus10034981
[exp]
15.3 0.7499
AT2G34480 Ribosomal protein L18ae/LX fam... Lus10023453
[exp]
20.2 0.7149
AT5G25250 SPFH/Band 7/PHB domain-contain... Lus10001944
[exp]
21.0 0.6878
AT1G31860 HISN2, AT-IE HISTIDINE BIOSYNTHESIS 2, hist... Lus10043483
[exp]
22.1 0.6970

Lus10006428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.