Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67560 1009 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G72520 897 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G17420 890 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT3G45140 742 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G55020 666 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 622 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015666 [exp] 917 / 0 AT1G17420 1381 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10013151 [exp] 913 / 0 AT1G17420 1397 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10008113 [exp] 909 / 0 AT1G17420 1396 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10031810 [exp] 786 / 0 AT3G45140 959 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10039094 [exp] 767 / 0 AT3G45140 946 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10041646 [exp] 764 / 0 AT3G45140 939 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002547 [exp] 760 / 0 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002545 [exp] 758 / 0 AT3G45140 991 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10032087 [exp] 727 / 0 AT3G45140 894 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G057100 [exp] 1156 / 0 AT1G67560 1144 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.008G178000 [exp] 1140 / 0 AT1G67560 1155 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.001G167700 [exp] 899 / 0 AT1G17420 1444 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.009G022400 [exp] 804 / 0 AT3G45140 1008 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015500 [exp] 796 / 0 AT3G45140 975 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015400 [exp] 792 / 0 AT3G45140 990 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.017G046200 [exp] 792 / 0 AT3G45140 979 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015300 [exp] 754 / 0 AT3G45140 943 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.003G067600 [exp] 700 / 0 AT1G17420 1000 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.005G032400 [exp] 661 / 0 AT1G55020 1308 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase CL0321 [flax] [poplar] PLAT PF01477 [flax] [poplar] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Lus10006429 pacid=23171994 polypeptide=Lus10006429 locus=Lus10006429.g ID=Lus10006429.BGIv1.0 annot-version=v1.0 ATGTCGACGGCGAAACAAAAACCTTCTGATGACATTCCGTCGACGAAGGCCAGCTCCGGCGGGGCGGCGATTGGCGGGGAAGAAGACAAGCAGCTTTCCT CCTCGTCCTCTGCATTTTTAGCCACCACAAAGACGACATCGGCGGCGGCGAGAGATGGGAAAGGAAAGGGGATTAATGCCGTGAAGGCGGTGGTCACGAT AAGGAGGGATATGAGAGGGAATTTGATTGAGAAGATTGGAGATCGGTGGGAGCATTTCGTTAACGGAATTGGCCATGGCATCTCCCTTCAGCTCGTCGGC GAAGAGCTCGACCCCGAGACCAACTCAGGAAAGTATGCAGAATCTAAGGTGAAGGGTTGGCAAAAAACTCCAGCATCAGGCGACCCTTACACAGTGGAAT ATGCAGCTATTTTCAAAGACGTCCCCCACGATTTCGGAACCCCCGGAGCTCTGATCGTAACCAATCTCCATCTCGACGAGTTCTTCTTGGTGAAGATCGT AGTTCATGGCTTCGATGGAGGTCCCTATTTCTTTCCGGCCAAGACTTGGATCCACCCCAGGCACAAGAATCCTGACAGCAGAATCATCTTCAGAAACCAA GCGTACCTTCCCTCGCAAACGCCACGAGGGATGGAAGACTTGAGGCGCAAGGATCTGCTCAGCATCCGTGGAAATGACAATGACGAGAGGAAGTATCACG ACAGGATCTACGACTACGACGTGTACAACGACTTGGGAAATCCTGACCAGGACGACCAAGATCTCGCGAGGCCAGTTCTCGGTGGCAACACCGAGCTTCC TTATCCTAGACGATGCAGAACTGGTCGCTCTAAAGCCAAGACAGATGAGCATAGTGAGAGCAGGATTGAGAAGCCGAAGCCTGTGTACGTGCCACGAGAC GAGAAGTTCGGGGAGACAAAGGTGGCAACTTTCGCGGTGGGGAAGCTGAAATCGGTTCTTCACAACCTTATCCCTGCTATAGCTAACGCATTGTCGGATT GCGACGATCCGTTTGTGTGCTTTTCCGACATCGACGCTCTCTTCAGCAACGGGTTTCTCATCAGAGCTAAAACAGGAGGTCTCGGCAAGGTTGTGAAGAA GATTTGGAATACCGGCCATGAACTGTTCAAGTACGACACCCCAGCTATTATCAGAATGGATCGATTTGCGTGGCTTCGAGACGTGGAATTCGGAAGGCAG ACACTGGCCGGGGTGAATCCGCTGAACATCGAACTTCTAAAGGAATTTCCAATCGTGAGCAAGCTAGACCCTGCTATTTATGGCCCTCAAGAGTCTGCTC TAACACAGCAAGTAATTGAGAGTGATCTCCATGAGATGAGTTTGGAACAGGCAATGAAGGAGAAGAGACTCTTCATCCTAGATTACCACGACATGATCAT CCCCTTCGTCGAAAAAATCAACTCCTTACCGGGACGAAAAATGTACGGCAGCAGAACGATCCTCTACTACAGCAAATCTGGCTTCCTAAAGCCACTAGCC ATCGAGCTCTCCCTCCCTCCGAGTTATAAGCACATCTACACCCGCGGCCACGATGCCACGAGCCATTGGCTATGGAAGCTAGCCAAGGCACACGTGTGCT CGACCGATGCTGGGGTCCACCAGCTAGTGAACCACTGGCTGAGGACTCATGCATGTATGGAGCCGTACATAATCGCTGCGAACCGGCAGCTGAGCGCGAT GCATCCGGTCTACAAGCTGCTGCATCCTCACATGCGGTACACGCTGGAGATCAATGCACTTGCGAGGCAGAGCTTGATCAATGGGGGTGGGATTATCGAG GCATCGTTTAGCCCGGGGAAGTATGCTGTGGAGCTGAGTTCTAAGGCTTATAAGGAACTGTGGCGGTTCGATATGGAGGGGCTGCCTGCTGATCTTGTTC GGAGGGGGATGGCAGAGGAAGACCCTACATCACCAACAGGAATAAAGCTAGTAATCGAAGACTACCCATACGCATCAGACGGACTCCTAATTTGGTCAGC AATCAAATCACTAGTCGAAAACTACGTCGACCACTTCTACTTTGAACCGAACTCGATCCAATCCGATCCCGAACTAAATTCCTGGTGGGACGAGGTCATT ACAAGGGGCCACGAGGACAAAAAGAACGAGCCATGGTGGCCGAAGCTCGAAACAAATTCGGACCTAACCTCAATCCTCACCACCATAATCTGGACCGCTT CGGGGTTCCACGCAGCGATCAACTTCGGGCAGTACCCTTTCGGAGGGTACGTTCCAAACCGCCCCACGCTGATGAGACGGTTGATCCCGAAAGAGGACGA TCCGGACTTCCACGAGAAGTTCATGGTGAATCCTCAGAGGTTTTTTCTCTCTTCCTTGCCGACCAAGCTTCAGGCCGGCAAGGTTATGGCCGTGCAGGAC ACGCTTTCGACTCATGCCGAAGACGAAGAGTATTTGGGTCAGGGGAGGGATTGGATTGGTGATGATGAAGATTTGAAGGGGTTGTTTGAGAGGTTTTCTG AGAGGATGGTGGAGATTGAGGAAGAGATTCATAAGAGGAATAAGGATAAGAGGCTTAAGAACAGGAATGGTGCCGGTGTTCCGGCTTACGAATTGTTGGT CCCGAGCTCTGAACCGGGTGTTACTGGTCGGGGGATTCCGAATAGTATTTCGATTTGA
AA sequence Show only first row Show all	>Lus10006429 pacid=23171994 polypeptide=Lus10006429 locus=Lus10006429.g ID=Lus10006429.BGIv1.0 annot-version=v1.0 MSTAKQKPSDDIPSTKASSGGAAIGGEEDKQLSSSSSAFLATTKTTSAAARDGKGKGINAVKAVVTIRRDMRGNLIEKIGDRWEHFVNGIGHGISLQLVG EELDPETNSGKYAESKVKGWQKTPASGDPYTVEYAAIFKDVPHDFGTPGALIVTNLHLDEFFLVKIVVHGFDGGPYFFPAKTWIHPRHKNPDSRIIFRNQ AYLPSQTPRGMEDLRRKDLLSIRGNDNDERKYHDRIYDYDVYNDLGNPDQDDQDLARPVLGGNTELPYPRRCRTGRSKAKTDEHSESRIEKPKPVYVPRD EKFGETKVATFAVGKLKSVLHNLIPAIANALSDCDDPFVCFSDIDALFSNGFLIRAKTGGLGKVVKKIWNTGHELFKYDTPAIIRMDRFAWLRDVEFGRQ TLAGVNPLNIELLKEFPIVSKLDPAIYGPQESALTQQVIESDLHEMSLEQAMKEKRLFILDYHDMIIPFVEKINSLPGRKMYGSRTILYYSKSGFLKPLA IELSLPPSYKHIYTRGHDATSHWLWKLAKAHVCSTDAGVHQLVNHWLRTHACMEPYIIAANRQLSAMHPVYKLLHPHMRYTLEINALARQSLINGGGIIE ASFSPGKYAVELSSKAYKELWRFDMEGLPADLVRRGMAEEDPTSPTGIKLVIEDYPYASDGLLIWSAIKSLVENYVDHFYFEPNSIQSDPELNSWWDEVI TRGHEDKKNEPWWPKLETNSDLTSILTTIIWTASGFHAAINFGQYPFGGYVPNRPTLMRRLIPKEDDPDFHEKFMVNPQRFFLSSLPTKLQAGKVMAVQD TLSTHAEDEEYLGQGRDWIGDDEDLKGLFERFSERMVEIEEEIHKRNKDKRLKNRNGAGVPAYELLVPSSEPGVTGRGIPNSISI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67560		ATLOX6, LOX6	Arabidopsis thaliana lipoxygen...		Lus10006429 [exp]	0	1
AT1G18700			DNAJ heat shock N-terminal dom...		Lus10001649 [exp]	1.4	0.9659
AT2G32970			unknown protein		Lus10030016 [exp]	5.5	0.9623
					Lus10036436 [exp]	7.5	0.9386
AT1G72490			unknown protein		Lus10015679 [exp]	10.0	0.9558
AT4G19380			Long-chain fatty alcohol dehyd...		Lus10035673 [exp]	11.5	0.9204
					Lus10020564 [exp]	14.3	0.9416
AT5G11420			Protein of unknown function, D...		Lus10025753 [exp]	15.0	0.9526
AT1G60783			unknown protein		Lus10006204 [exp]	15.4	0.8768
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10024854 [exp]	15.6	0.9418
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10033939 [exp]	15.9	0.9466

Compare expression of checked genes

Lus10006429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.