Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67570 407 / 1e-139 Protein of unknown function (DUF3537) (.1) AT3G20300 144 / 5e-38 Protein of unknown function (DUF3537) (.1) AT1G50630 133 / 4e-34 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2) AT4G22270 115 / 5e-28 ATMRB1 ARABIDOPSIS MEMBRANE RELATED BIGGER1, Protein of unknown function (DUF3537) (.1) AT2G21080 112 / 5e-27 unknown protein AT4G03820 100 / 1e-22 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011371 [exp] 687 / 0 AT1G67570 529 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10043011 [exp] 320 / 1e-105 AT1G67570 404 / 2e-138 Protein of unknown function (DUF3537) (.1) Lus10032513 [exp] 233 / 1e-72 AT1G67570 319 / 4e-106 Protein of unknown function (DUF3537) (.1) Lus10002334 [exp] 155 / 2e-42 AT3G20300 616 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10009722 [exp] 154 / 1e-40 AT3G20300 626 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10033919 [exp] 146 / 8e-39 AT3G20300 476 / 2e-166 Protein of unknown function (DUF3537) (.1) Lus10024308 [exp] 135 / 6e-35 AT3G20300 473 / 5e-165 Protein of unknown function (DUF3537) (.1) Lus10036448 [exp] 125 / 3e-31 AT2G21080 450 / 5e-157 unknown protein Lus10032512 [exp] 107 / 3e-28 AT1G67570 94 / 5e-24 Protein of unknown function (DUF3537) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G178100 [exp] 493 / 5e-173 AT1G67570 491 / 3e-172 Protein of unknown function (DUF3537) (.1) Potri.015G092200 [exp] 355 / 4e-119 AT1G67570 405 / 8e-139 Protein of unknown function (DUF3537) (.1) Potri.012G094700 [exp] 348 / 2e-116 AT1G67570 417 / 2e-143 Protein of unknown function (DUF3537) (.1) Potri.001G356200 [exp] 155 / 3e-42 AT3G20300 613 / 0.0 Protein of unknown function (DUF3537) (.1) Potri.006G279200 [exp] 123 / 8e-31 AT2G21080 453 / 6e-158 unknown protein Potri.018G002700 [exp] 115 / 4e-28 AT2G21080 447 / 9e-156 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12056 [flax] [poplar] DUF3537 Protein of unknown function (DUF3537)
Representative CDS sequence Show only first row Show all	>Lus10006430 pacid=23171956 polypeptide=Lus10006430 locus=Lus10006430.g ID=Lus10006430.BGIv1.0 annot-version=v1.0 ATGGCGGATCCTCATCTTCTTCCTCCCCTGCCTCCCCCTCCTCCTCCTGTTCTCGAAACCCACTTGCAAATTGACCCTTCACCCAACCTCGCCAGCCACA TAACGCCTCTCCTCAATTTCGCCCAGAACAATGGGTACAACAATAACCAAAGCCATCACCACGAAACCCTCTCTGCACAGGACAATGATCTCGATCAAAC TCTGCAGAGGCTGGAAACTTTCCTCTGCTTTCTGGGCTTCTGCCAATCTTCGGTCTTCAGCTTCCTTGTTTCTTGGACAGTTTTTTTACTGATTGGCGTA GCTCTCCCAGTTGTAATACTTGAACTGTCACACTGTCCTGGGCGCGAGAAGTTCCAGATCAAGAATTTCGAACTGGATATTGTGGCGTCACAAGCTTGTC TGGCGGCTGTTTCTTTGATTTGCTTGTCTCATAATATGCGCAAGTATGGCATTAAGAAGTTTCTCTTTGTGGACCGGTATGGTGGGCAGATGACTCGCTT GAGCAGTCAGTATATTGCACAGATAAAGGATTCATTGTATTTGCTAGTTCTTTGGTCATTGCCGTGTTTCGTTCTCAAGGTTGTACGGGAAGTGATTCGT ATATCGTACGTACAACAAGAATCATGGTGGGTTTCTACTTCTATACTGTTCGGGTTAATAATATCGTGGAGCTATGTGAGTACTATATCTCTAGCAGCCA GTGTAGTCTTCCATATGGTATGCAACCTGCAAGTTATTCACTTTGAGGACTATGGGAAGCTCTTGGAAAGGGAGTCTGATGTTCTGATATTCATTGAGGA ACACATTCGCCTGCGGTCACTGGATACAGTGGCATCATCACCGCCATTTATGGCGCCTCCCCCCCCACTCCCCCCCCCCCCCGCTATTAGTGGCGTTGAT TTCGTGGTCTCGTCGATCGTTCAGGTAGTTGGAATAATCGTTTCCTTGCATGCAGCTACAAGAATTTCCCACAGAGCACAGGCTATCGCTTGCCTGGCGA GTCGATGGCACGCTTTAGCAACATGCAACGCTGTAGCTGCCGGAAGCTCGGAGGCGTCAGGATACTCGTCCACGAACTCGTTGCTGAGGTGCAATTCGGA GAGCGAATTGGAATCATTCGACTACATTGCAGTGCCTACAAACACTCAATTGGCTTCTTATATGTCATCTTATCACAGGAGGCAAGCCTTCGTGATGTAT CTGCAGAACAATCCTGGAGGGATCACGATATTCGGGTGGACTGTTGACCGGGGACTCCTCAACACGATCTTCTTCATCGAGCTCACCCTCGTCACGTTCT TGCTTGGGAAGACTATAGTCTTCAGCAGCTCAAGCTGA
AA sequence Show only first row Show all	>Lus10006430 pacid=23171956 polypeptide=Lus10006430 locus=Lus10006430.g ID=Lus10006430.BGIv1.0 annot-version=v1.0 MADPHLLPPLPPPPPPVLETHLQIDPSPNLASHITPLLNFAQNNGYNNNQSHHHETLSAQDNDLDQTLQRLETFLCFLGFCQSSVFSFLVSWTVFLLIGV ALPVVILELSHCPGREKFQIKNFELDIVASQACLAAVSLICLSHNMRKYGIKKFLFVDRYGGQMTRLSSQYIAQIKDSLYLLVLWSLPCFVLKVVREVIR ISYVQQESWWVSTSILFGLIISWSYVSTISLAASVVFHMVCNLQVIHFEDYGKLLERESDVLIFIEEHIRLRSLDTVASSPPFMAPPPPLPPPPAISGVD FVVSSIVQVVGIIVSLHAATRISHRAQAIACLASRWHALATCNAVAAGSSEASGYSSTNSLLRCNSESELESFDYIAVPTNTQLASYMSSYHRRQAFVMY LQNNPGGITIFGWTVDRGLLNTIFFIELTLVTFLLGKTIVFSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67570			Protein of unknown function (D...		Lus10006430 [exp]	0	1
					Lus10022348 [exp]	1.4	0.8402
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Lus10019688 [exp]	4.0	0.7689
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034702 [exp]	5.3	0.8340
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Lus10027172 [exp]	6.0	0.7946
AT3G01930			Major facilitator superfamily ...		Lus10032034 [exp]	8.1	0.7075
AT3G29270			RING/U-box superfamily protein...		Lus10030699 [exp]	8.9	0.8155
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10019411 [exp]	10.8	0.8304
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10028445 [exp]	12.5	0.7797
AT1G67570			Protein of unknown function (D...		Lus10011371 [exp]	12.6	0.7654
AT5G47740			Adenine nucleotide alpha hydro...		Lus10002238 [exp]	13.0	0.8176

Compare expression of checked genes

Lus10006430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.