Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67600 241 / 1e-82 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT1G24350 233 / 1e-79 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) AT3G21610 189 / 5e-62 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) AT3G61770 128 / 1e-36 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT3G12685 89 / 2e-22 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011373 [exp] 310 / 6e-110 AT1G67600 245 / 2e-84 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10036984 [exp] 215 / 4e-73 AT1G24350 185 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) Lus10035299 [exp] 183 / 3e-59 AT3G21610 275 / 1e-95 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10000883 [exp] 178 / 1e-57 AT3G21610 224 / 3e-76 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10003670 [exp] 177 / 5e-57 AT3G21610 219 / 1e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10030025 [exp] 167 / 1e-52 AT3G21610 243 / 6e-82 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10030253 [exp] 127 / 5e-38 AT3G61770 245 / 5e-83 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10001756 [exp] 74 / 4e-16 AT3G12685 206 / 2e-66 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10001841 [exp] 74 / 5e-16 AT3G12685 206 / 2e-66 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G056600 [exp] 262 / 1e-90 AT1G67600 254 / 8e-88 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.011G087100 [exp] 192 / 2e-63 AT3G21610 204 / 9e-68 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.014G156000 [exp] 177 / 4e-57 AT3G21610 184 / 5e-60 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.002G226900 [exp] 171 / 5e-55 AT3G21610 218 / 2e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.002G171300 [exp] 135 / 2e-39 AT3G61770 331 / 3e-114 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.010G176100 [exp] 67 / 2e-13 AT3G12685 193 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [flax] [poplar] pap2 PF02681 [flax] [poplar] DUF212 Divergent PAP2 family
Representative CDS sequence Show only first row Show all	>Lus10006432 pacid=23171996 polypeptide=Lus10006432 locus=Lus10006432.g ID=Lus10006432.BGIv1.0 annot-version=v1.0 ATGGGGGATCAGAGCGCTGATGGTTCTTCTTCTTATTCTTCTTCGTCGTCGATTTTCACTAACTATCCTCTGATAGCTGCACTTGTCGCGTTCGCCGTCG CGCAATCTATCAAGTTCTTCACCACCTGGTATAAAGAAAATCGATGGGATTTAAAGCAGTTCATTGGATCCGGTGGGATGCCTTCTTCCCATTCGTCCAC TGTTTGTGCACTTGCCATGAGCATCGGGTTCCAGGAAGGCTTTGGAGGATCACTTTTCGCAGCTGCGTTGATCTTATCATGCATTGTGATGTATGATGCT ACTGGTGTAAGACTTCAGGCTGGACGCCAAGCCGAGGTATTGAATCAAATTGTATACGAACTGCCTGCTGACCATCCTTTGGCTGAGAGCATACCTCTTC GCGAGCTTCTCGGTCACACTCCGGCTCAGGTCATCGCCGGTAGTTTACTTGGAGTAGTCACGGCTATCATTGGCCACCTGATCACAATGACTACTAGTCA AAGTTGA
AA sequence Show only first row Show all	>Lus10006432 pacid=23171996 polypeptide=Lus10006432 locus=Lus10006432.g ID=Lus10006432.BGIv1.0 annot-version=v1.0 MGDQSADGSSSYSSSSSIFTNYPLIAALVAFAVAQSIKFFTTWYKENRWDLKQFIGSGGMPSSHSSTVCALAMSIGFQEGFGGSLFAAALILSCIVMYDA TGVRLQAGRQAEVLNQIVYELPADHPLAESIPLRELLGHTPAQVIAGSLLGVVTAIIGHLITMTTSQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10006432 [exp]	0	1
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10038923 [exp]	1.7	0.9139
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027211 [exp]	2.4	0.9017
					Lus10032068 [exp]	2.4	0.8720
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10012556 [exp]	5.9	0.8567
AT1G03350			BSD domain-containing protein ...		Lus10042670 [exp]	6.3	0.8696
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Lus10002908 [exp]	7.1	0.8623
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10011373 [exp]	9.5	0.8585
AT3G27250			unknown protein		Lus10032077 [exp]	11.0	0.8457
					Lus10017659 [exp]	12.0	0.7855
AT3G08890			Protein of unknown function, D...		Lus10002862 [exp]	14.0	0.8127

Compare expression of checked genes

Lus10006432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.