Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27850 237 / 6e-64 unknown protein AT2G40070 80 / 5e-15 unknown protein AT3G08670 62 / 1e-09 unknown protein AT3G09000 56 / 9e-08 proline-rich family protein (.1) AT2G38160 44 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011374 [exp] 1774 / 0 AT2G40070 151 / 8e-37 unknown protein Lus10030402 [exp] 86 / 1e-16 AT2G40070 561 / 0.0 unknown protein Lus10021382 [exp] 69 / 2e-11 AT3G08670 432 / 4e-145 unknown protein Lus10040188 [exp] 68 / 3e-11 AT2G40070 533 / 0.0 unknown protein Lus10035528 [exp] 64 / 5e-10 AT2G40070 280 / 4e-83 unknown protein Lus10002493 [exp] 62 / 2e-09 AT2G40070 300 / 2e-95 unknown protein Lus10004824 [exp] 61 / 5e-09 AT3G09000 286 / 3e-90 proline-rich family protein (.1) Lus10027767 [exp] 60 / 1e-08 AT2G40070 288 / 5e-86 unknown protein Lus10024526 [exp] 59 / 1e-08 AT2G40070 66 / 2e-11 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G056200 [exp] 868 / 0 AT1G27850 240 / 1e-64 unknown protein Potri.008G178600 [exp] 838 / 0 AT1G27850 567 / 0.0 unknown protein Potri.008G066900 [exp] 87 / 3e-17 AT2G40070 321 / 1e-102 unknown protein Potri.010G190300 [exp] 82 / 1e-15 AT2G40070 368 / 6e-121 unknown protein Potri.010G177000 [exp] 66 / 5e-11 AT2G40070 82 / 9e-17 unknown protein Potri.016G139500 [exp] 61 / 3e-09 AT3G08670 245 / 2e-73 unknown protein Potri.016G114900 [exp] 53 / 1e-06 AT2G40070 352 / 7e-114 unknown protein Potri.006G110700 [exp] 44 / 0.0009 AT3G08670 251 / 1e-75 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006433 pacid=23172003 polypeptide=Lus10006433 locus=Lus10006433.g ID=Lus10006433.BGIv1.0 annot-version=v1.0 ATGCCGCCATCTCCGGGGTTGAGATTCTCTCCAGGGAGGGAATCCAAAGGTGCTACTGCTGCTGGTGATAGTCACAAGCGAGGGAGAAGTCTTGAAGGTG GGATTCTGTCCAAGGAGAAAGATGATGATCTTGCCTTGTTTAATGAGATGCAGAGTAGGGAGAAGGAGGATTTCTTGCTCCAGTCAACTGATGATTTCGA AGACTCGTTCTCGACAAAGCTGCGATATTTCTCGGATTTGAAGCTTGGGATCTCGGTTGCTGGACGTGGGGAGTGTAGTGGAATGTTAAATGCTGAAGGG GAGAAGAATGACTATGATTGGTTAATAACTCCTCCGGACACCCCTCTTTTCCCTTCATTGGACGATGAGCCAGTGCCAGCTAGTCTTCTGGCAAGGGGTA GACCTCGAAGTCAACCTATTTCCATTTCAAGATCATCTACGATGGAGAAGAGTTACAGAAGCAGTAGAGGCAGTGCGAGTCCTAATCGTTCAAGTCCATC TCCTCGCTCTGGTAGCAGTACGTTGCAGTCAAGGGGGAGGCCATCATCATCTACACGTAATTCTAGTCCAACTCCTAGTCAACGGCCAGTTACTCCATCG CGTAGACCATCTACTCCTCCAAGTAAAGCCTCACCGGCCGGTCCAAGGTCTTCGACACCTACTCCAAGGAGGGCGAGCACTGGGTCGGCTCAAAGAGGGG TTTCTCCAGTACGCTCTACAAGTGGGAACTCTGTTTCTCCAAAAGTAAAAGCCTGGCAGTCTACCATACCTGGTTTCTCCTCTGAAGCACCACCCAATCT TCGTACTTCTTTGGGTGATCGACCGGCATCATATGTGAGGGGATCCTCACCAGCTTCCAGGAATGGCAGGCAATCAATGTCTCCAATTGCTTCTAGAAGC GCCAGTTCTTCGCACAGTCAAGATCGAGATAGAACAAGTTCATATAGTAAAGGCTCAGTTGCCTCATCTGGTGATGACGACGTAGAGTCTTTGCAATCAG TTCATGTGGGCAGCTTAGATCGATCCAGAAGAGTAGGTGGATTTTCGAACAATAGAATTTCGGCATTGCCAAAGAAACCGGCTAGAGTTTTCTCCCCAAG TTCTGCTCCAAAACGGTCCTTTGACTCTGCCATTCGTCAAATGGATCACCGGAAAAGTCCACAGAATATGTTCAGGCCACTCCTGTCAAGTGTCCCAAGT ACCACTTTCTATGCCGGAAAAGTAAGTTCGGCCGAACGGTCTTTGGTGTCCATGACTTCTTCGGTTACAACAAGTAGTAATGCAAGCTCAGAGCAAGCAG CTAGTTTTGCCCCCGATACTGATGGAAATGACCACCATCCCAATATCGTGGCAATTGAAACCGGGTACAACAGTGTACGAGAAGATATATTTGCCTTTGA TAAGGCAGATGACCTGAATGAAGATAGCATAGTGAACGGGGTACCTCAGTCTCGGTCTGAGCTTCAAGTTCCTGATAAAGATTCTATAATAAAAAGCGAG CCTGAGGACTCCGAAGAATTCAGCCAACAAGATGTCGGTGGTGAAGTCAGTTCTGCATCTGATGCTATGTTTGTTCGAGACAGTTCTTGCAGCCTCGACA TAAAAATTTGTTCTAGATGTGGTTGCAAATACCGTGATGTTGAAGCAATGGAAACAACCGACATCAATCTTTGTGAAGACTGCAGTAAGCAAGACAGTGT TGTGTCTTGCAACGCTCTGGAGACTGTAACGGCTGAGAACCCTCTGCAACTGTCCATTAGTAAAGCCGAAGAGAGTAAACAAATTGACGAATCGAAGCTA ATTATTGATGTACCGGAATTGCAATCCCAAATGGAAAATGTGGTTTATTCTAGTGATGCTTTGAGCCATGAGCTGAGCCATATGCATCCACAGGAAGGCT CTGTTGCTCCTTCAGCAGAGGACAGAAAGGAGCACAAGATGACCGATAAGAAAGGATTTACGGAGCCAGCACTTGTCCGTAGCGTATCTGATATTGTCAC TGGGACTCTCCAATTGCCGAACTACAACGAAGGTGCTGGCATCTCAGTAGTGCTTAGGAAATCCAGCAGCATCAAAGGGCATGTCTTCCAAGGCAGGAGC TTTACTGCCTCCAGTGTTAGCTACGATGACGTGTCTTTTACAAGAGATAGTGCAAACAGCTTGAGAAGCTCCATTGGTCATGGCAGCACATCAGGATCAT CCTCTGTTGATTTGTACTCAGCTAGGCAAATGGAAGCAGCCCGTATTCAGCGGCAACTGAGTGTCAGCAAAAAGGGTGATCTTGACAGTGCCAGACCTCT AAGCCGTGGGTCGTCCTTTTCCGGGTCTGTAAACCTTGGTCACCAAGTTGCTGGACTCGGTACGAGTACCGTTGAAGCAAGGGACGAAGTTGGCGGATCA GTGGTAATCAACTCTGAAAATAATGAAGTTGATAGCTCGAAAATGTCTTCCGCTGGTCCAGTAGTCCCAGACGAATATATATGTGAGAGAAGTGACAGCA GCAGAACTATGGAGTTGGAGGAGCATGCGGCATTACCTCTGACCTCTAATGAGGAGGCGTATCAAAACTATGCAGTTAATCCCTCAGATACGGATGAAGC ATCTCCCTTGGAATCCTCTCTTGAAGCCAAAAACAAAGCTGAGGTTCCCGGTCACAGTAGGCTGGCATCGATATCGGAAATCGAAGCCGAGGATCATCGT CCGAGTCATCGTAGCTCAGAGAGCATCGACCTCTCAGCTAATTTGAGAATCATGGTGGACAAAATTGAAGATCCTTCGGTATCTGCACCATCAGACAAGG ATGCCACTACTCCCGTCCTGGAAAACAACACTTCAGGTCGTGAACGAGGTGTTTTAGATGAGTCGACGGTAATGGTGGAATGTTCCGGTGGCAACAAGGC AAGAAGCCTAACCCTCGAAGAAGCCACCGACACAATACTCTTCTGCAGCTCCATCGTCCATGACCTGGCTTACCGAGCAGCAACAATAGCCATCGAAAAG GAACTCTCGGTCCCACTAGACGATTCTCGGCCAACAGTTACAATCCTCGGGAAGTCCACCCCAGACAGGAAGGAAGCCCGGGGAAGAACCAAACGAGGCT CGAAATCCTCAAAAGTGAAGCAGAAACAACTTGAATCTGCCACAAAGAGCCCTGCAGCCAAGCTAGAGAACGACGAGAACGATGAGAATAATGCCAACGA CGATCTCACGGTTCGGAACGTGGCCCTTCCTCCTTCTTTTGATCATAACAATAAGATGGATAGCTCAAAGCCTCCAAAGCTTGAATCCAAGTGCAATTGC ACAATAATGTGA
AA sequence Show only first row Show all	>Lus10006433 pacid=23172003 polypeptide=Lus10006433 locus=Lus10006433.g ID=Lus10006433.BGIv1.0 annot-version=v1.0 MPPSPGLRFSPGRESKGATAAGDSHKRGRSLEGGILSKEKDDDLALFNEMQSREKEDFLLQSTDDFEDSFSTKLRYFSDLKLGISVAGRGECSGMLNAEG EKNDYDWLITPPDTPLFPSLDDEPVPASLLARGRPRSQPISISRSSTMEKSYRSSRGSASPNRSSPSPRSGSSTLQSRGRPSSSTRNSSPTPSQRPVTPS RRPSTPPSKASPAGPRSSTPTPRRASTGSAQRGVSPVRSTSGNSVSPKVKAWQSTIPGFSSEAPPNLRTSLGDRPASYVRGSSPASRNGRQSMSPIASRS ASSSHSQDRDRTSSYSKGSVASSGDDDVESLQSVHVGSLDRSRRVGGFSNNRISALPKKPARVFSPSSAPKRSFDSAIRQMDHRKSPQNMFRPLLSSVPS TTFYAGKVSSAERSLVSMTSSVTTSSNASSEQAASFAPDTDGNDHHPNIVAIETGYNSVREDIFAFDKADDLNEDSIVNGVPQSRSELQVPDKDSIIKSE PEDSEEFSQQDVGGEVSSASDAMFVRDSSCSLDIKICSRCGCKYRDVEAMETTDINLCEDCSKQDSVVSCNALETVTAENPLQLSISKAEESKQIDESKL IIDVPELQSQMENVVYSSDALSHELSHMHPQEGSVAPSAEDRKEHKMTDKKGFTEPALVRSVSDIVTGTLQLPNYNEGAGISVVLRKSSSIKGHVFQGRS FTASSVSYDDVSFTRDSANSLRSSIGHGSTSGSSSVDLYSARQMEAARIQRQLSVSKKGDLDSARPLSRGSSFSGSVNLGHQVAGLGTSTVEARDEVGGS VVINSENNEVDSSKMSSAGPVVPDEYICERSDSSRTMELEEHAALPLTSNEEAYQNYAVNPSDTDEASPLESSLEAKNKAEVPGHSRLASISEIEAEDHR PSHRSSESIDLSANLRIMVDKIEDPSVSAPSDKDATTPVLENNTSGRERGVLDESTVMVECSGGNKARSLTLEEATDTILFCSSIVHDLAYRAATIAIEK ELSVPLDDSRPTVTILGKSTPDRKEARGRTKRGSKSSKVKQKQLESATKSPAAKLENDENDENNANDDLTVRNVALPPSFDHNNKMDSSKPPKLESKCNC TIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27850			unknown protein		Lus10006433 [exp]	0	1
AT5G22760			PHD finger family protein (.1)		Lus10009383 [exp]	1.7	0.9553
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10013178 [exp]	2.4	0.9433
AT5G22760			PHD finger family protein (.1)		Lus10020532 [exp]	2.8	0.9532
AT1G72410			COP1-interacting protein-relat...		Lus10008140 [exp]	2.8	0.9412
AT4G32620			Enhancer of polycomb-like tran...		Lus10041252 [exp]	6.5	0.9337
AT4G32620			Enhancer of polycomb-like tran...		Lus10021959 [exp]	6.7	0.9367
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001744 [exp]	7.0	0.9313
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10042843 [exp]	7.9	0.9254
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014548 [exp]	8.9	0.9257
AT4G14920			Acyl-CoA N-acyltransferase wit...		Lus10010562 [exp]	12.0	0.9226

Compare expression of checked genes

Lus10006433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.