Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67623 57 / 2e-09 F-box family protein (.1) AT1G74875 53 / 6e-08 unknown protein AT2G35280 42 / 9e-05 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030790 [exp] 194 / 1e-60 AT1G67623 57 / 4e-09 F-box family protein (.1) Lus10037978 [exp] 102 / 5e-26 AT1G67623 82 / 3e-18 F-box family protein (.1) Lus10038709 [exp] 100 / 4e-25 AT1G67623 90 / 3e-21 F-box family protein (.1) Lus10022147 [exp] 78 / 1e-17 AT1G67623 78 / 5e-18 F-box family protein (.1) Lus10030128 [exp] 69 / 1e-13 AT1G67623 71 / 2e-14 F-box family protein (.1) Lus10005844 [exp] 64 / 1e-12 AT1G67623 76 / 3e-17 F-box family protein (.1) Lus10038720 [exp] 56 / 3e-09 ND 41 / 8e-05 Lus10023768 [exp] 41 / 0.0001 AT1G74875 66 / 6e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008800 [exp] 87 / 5e-20 AT1G74875 110 / 2e-29 unknown protein Potri.001G321400 [exp] 68 / 2e-13 AT1G67623 102 / 6e-26 F-box family protein (.1) Potri.015G096200 [exp] 44 / 6e-05 AT1G67340 438 / 3e-154 HCP-like superfamily protein with MYND-type zinc finger (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006434 pacid=23171970 polypeptide=Lus10006434 locus=Lus10006434.g ID=Lus10006434.BGIv1.0 annot-version=v1.0 ATGTGTTACCCGTCGCGCTCCAAACCTTCACCGCCGCAGTCGAACCGCCGCCGCCGGTCAAACAACAAGAGATCATGTAGAGGAAGAAAGACAAGAGATC TGCTGTCCTCCGATCAAAGCCTGACCGATTATCTGCCGTCCGATCTCCTGGTGGAAGTCCTGTCCCACGTGGCGTCCAACTCAGTCGCCGACCTCCTTAG CTTCAAGCAGACATGCAAGCTTCTGTCCGAGTCAGCATCAGAACGCCACGTCATCCAAAACGCCGCCGTTTTAGACATGTACTCTTTCAACAAAAGGTCC GAACTAGACGACCAGAATAGCTACGCCCGCTTCATTGCGCAATGCGTGGCCAGCGACAACCTTGAAGCGCTGTTCTGCCGCGGAATCGAAGACTACTTTT CCAGAGGTGAAGGTGCGATGTCGAACCTGAGGGCTGTCGCGGAGAGAGGTTTGAAGGCTGCCAAGTACGCTTGTGGGATCATCGGCCTGCTAACCGAGAA AGAAGAAGGGTTGGGGTTTTTGAGTGGTTTGAGGAAGGCGGGGGACTTGGGCAAATGTAGGGAGGCGGTGAAGTACGTGGTGAGGAGGAACATGTGGGTC AAGAATGTGGATCGGAATCATCCGATGTTCAGGGGGTTGGGGAGGGACGTCGTCGGTGGTGGTAGGTGTGGGTGCGATCGTCGGGTGGGGAGGGGGTTCG GGAGTTTCAGTAAGGATCCGGATTTCGAGTGGCGGACGATGGAGGAGCAAGTTGTTCAAGTTGTGGATAGTGGTCTTTGTGATTCTTGCTTCTGGGAGTT TGAGGCTTCTGTTTTTCGTAAATGTTTTTGA
AA sequence Show only first row Show all	>Lus10006434 pacid=23171970 polypeptide=Lus10006434 locus=Lus10006434.g ID=Lus10006434.BGIv1.0 annot-version=v1.0 MCYPSRSKPSPPQSNRRRRSNNKRSCRGRKTRDLLSSDQSLTDYLPSDLLVEVLSHVASNSVADLLSFKQTCKLLSESASERHVIQNAAVLDMYSFNKRS ELDDQNSYARFIAQCVASDNLEALFCRGIEDYFSRGEGAMSNLRAVAERGLKAAKYACGIIGLLTEKEEGLGFLSGLRKAGDLGKCREAVKYVVRRNMWV KNVDRNHPMFRGLGRDVVGGGRCGCDRRVGRGFGSFSKDPDFEWRTMEEQVVQVVDSGLCDSCFWEFEASVFRKCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67623			F-box family protein (.1)		Lus10006434 [exp]	0	1
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10012047 [exp]	5.9	0.9691
AT4G15733		SCRL11	SCR-like 11 (.1)		Lus10029762 [exp]	8.8	0.9411
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10016284 [exp]	8.8	0.9677
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10012743 [exp]	9.3	0.9507
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10037726 [exp]	10.2	0.9672
AT3G02645			Plant protein of unknown funct...		Lus10023185 [exp]	11.0	0.9218
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024910 [exp]	11.6	0.9357
AT5G60330			unknown protein		Lus10018274 [exp]	12.0	0.9671
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10009824 [exp]	12.2	0.9092
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021435 [exp]	14.0	0.9653

Compare expression of checked genes

Lus10006434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.