Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04120 558 / 0 GAPC1, GAPC-1, GAPC glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) AT1G13440 558 / 0 GAPC2, GAPC-2 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) AT1G79530 487 / 6e-173 GAPCP-1 glyceraldehyde-3-phosphate dehydrogenase of plastid 1 (.1) AT1G16300 482 / 4e-171 GAPCP-2 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) AT1G42970 273 / 7e-89 GAPB glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) AT1G12900 262 / 1e-85 GAPA-2 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (.1.2.3.4) AT3G26650 256 / 8e-83 GAPA-1, GAPA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011375 [exp] 651 / 0 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10015826 [exp] 624 / 0 AT3G04120 606 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10036976 [exp] 608 / 0 AT3G04120 592 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10022332 [exp] 567 / 0 AT1G13440 632 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Lus10014603 [exp] 565 / 0 AT3G04120 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10032071 [exp] 565 / 0 AT3G04120 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10009602 [exp] 482 / 6e-171 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10000872 [exp] 480 / 2e-170 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10016033 [exp] 266 / 6e-86 AT1G42970 758 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G335800 [exp] 582 / 0 AT3G04120 585 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.012G094100 [exp] 577 / 0 AT1G13440 580 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.010G055400 [exp] 575 / 0 AT3G04120 592 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.015G091400 [exp] 565 / 0 AT1G13440 578 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.008G179300 [exp] 556 / 0 AT3G04120 573 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.010G172400 [exp] 483 / 2e-171 AT1G16300 618 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.008G083900 [exp] 482 / 4e-171 AT1G16300 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.002G007100 [exp] 262 / 7e-85 AT1G42970 690 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.005G254100 [exp] 263 / 2e-84 AT1G42970 732 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.002G220566 [exp] 249 / 5e-80 AT3G26650 614 / 0.0 GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00044 [flax] [poplar] Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02800 [flax] [poplar] Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10006435 pacid=23171960 polypeptide=Lus10006435 locus=Lus10006435.g ID=Lus10006435.BGIv1.0 annot-version=v1.0 ATGGCTAAGATCAAAATCGGAATCAACGGATTCGGACGTATCGGTCGTCTGGTTGCTAGAGTCGCGCTCCAGAGAGACGATGTTGAGCTCGTTGCTGTCA ACGATCCTTTCATCCCTACCGATTACATGGTTTACATGTTCAAGTATGATACAGTCCATGGTCACTGGAAGCACGGTGATGTGAAGGTGAAGGATGAGAG TACTCTCACCTTTGGAGATAAGGACGTCAAGGTTTTCGGCCTCAGGAACCCGGAAGAGATCCCATGGGGCTCAGTTGGTGCTGACTTCGTCGTTGAGTCT ACTGGTGTGTTCACTGACAAGGACAAGGCAGCTGCTCACTTGAAGGGTGGTGCTAAGAAGGTTGTCATTTCTGCACCAAGCAAAGATGCACCCATGTTTG TCGTTGGTGTCAACGAGAAGGAATACAAGCCAGAGCTTGACATTGTCTCTAACGCCAGTTGCACCACCAACTGCCTTGCTCCCTTGGCTAAGGTTATCAA TGACAGGTTCGGAATCGTCGAGGGTCTTATGACCACCGTCCATGCCATCACTGCCACCCAGAAGACTGTTGATGGACCATCAAACAAGGACTGGAGGGGT GGAAGGGCTGCTTCCTTCAACATCATTCCCAGCAGCACTGGAGCTGCCAAGGCTGTTGGCAAGGTTCTTCCAGCTCTCAATGGCAAACTGACCGGAATGG CTTTCCGAGTCCCAACCGCTGATGTCTCTGTTGTCGACTTGACTGTCAAGCTCGAGAAGAAGGCCACGTACGAACAAATCAAGGCTGCTATCAAGGAGGA ATCTGAGGGTAAGCTCAAGGGAATCTTGGGATACGTTGATGAGGACTGTGTCTCTGCCGATTTCGTCGGTGACAACAGGTCAAGCATCTTTGACGCCAGG GCTGGAATCGCATTGAACGATAACTTCGTCAAGCTCGTGTCTTGGTACGACAACGAATGGGGCTACAGCACCCGAGTCGTTGACTTGATCTCCTACATTG CCACAACCCTTTGA
AA sequence Show only first row Show all	>Lus10006435 pacid=23171960 polypeptide=Lus10006435 locus=Lus10006435.g ID=Lus10006435.BGIv1.0 annot-version=v1.0 MAKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIPTDYMVYMFKYDTVHGHWKHGDVKVKDESTLTFGDKDVKVFGLRNPEEIPWGSVGADFVVES TGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSNKDWRG GRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTADVSVVDLTVKLEKKATYEQIKAAIKEESEGKLKGILGYVDEDCVSADFVGDNRSSIFDAR AGIALNDNFVKLVSWYDNEWGYSTRVVDLISYIATTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10006435 [exp]	0	1
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10011502 [exp]	5.1	0.8775
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10002221 [exp]	7.2	0.8327
AT5G02420			unknown protein		Lus10037925 [exp]	9.9	0.8368
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10038356 [exp]	10.5	0.8552
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Lus10006843 [exp]	10.6	0.8394
AT5G17190			unknown protein		Lus10005110 [exp]	15.7	0.8411
AT3G05545			RING/U-box superfamily protein...		Lus10031491 [exp]	21.7	0.7909
AT1G12500			Nucleotide-sugar transporter f...		Lus10006684 [exp]	22.0	0.8413
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10021567 [exp]	22.2	0.8467
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10031220 [exp]	23.7	0.8370

Compare expression of checked genes

Lus10006435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.