Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25980 374 / 1e-133 MAD2 MITOTIC ARREST-DEFICIENT 2, DNA-binding HORMA family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011376 [exp] 424 / 1e-153 AT3G25980 366 / 9e-131 MITOTIC ARREST-DEFICIENT 2, DNA-binding HORMA family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G179600 [exp] 398 / 3e-143 AT3G25980 382 / 3e-137 MITOTIC ARREST-DEFICIENT 2, DNA-binding HORMA family protein (.1.2) Potri.010G055100 [exp] 395 / 2e-142 AT3G25980 378 / 1e-135 MITOTIC ARREST-DEFICIENT 2, DNA-binding HORMA family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0651 [flax] [poplar] Mad2 PF02301 [flax] [poplar] HORMA HORMA domain
Representative CDS sequence Show only first row Show all	>Lus10006436 pacid=23171955 polypeptide=Lus10006436 locus=Lus10006436.g ID=Lus10006436.BGIv1.0 annot-version=v1.0 ATGGCATCCAAGACCGCCGCGAAAGACATCATCACCCTCCGCGGCTCAGCCGCCATCGTCAGCGAGTTCTTCGGATATGCAGCGAACAGTATACTGTACA ATCGAGGAGTTTATCCTGAAGAGAGCTTTGCGAAGGTGAAGAAGTATGGGCTTCCGCTGTTGCTCACTCAGGATGAAGGTGTTAAAACCTTCATATCCAA TCTGAATGCTCAGTTATCAGAATGGCTGGAAGCTGGGCAGTTACAGAGAGTTGTCCTTGTGATAATGAGCAAAGCCACTGGTGAAGTCCTGGAAAGGTGG AATTTCAGCATTGAGACTGATGGTGAGGTAGTTGAGAAAGGGGTGTCTAGGGAGAAGAGTGACAAGGAAATCATGAGAGAGATACAGGCAATCATGCGCC AGATTGCATCCAGCATCACTTACCTGCCATGCCTGGATGAACAATGCGTGTTTGATGTCTTGGCATACACTGATAAAGAGGTAGCAGTCCCGTTTACCTG GATCGAGAGTGACCCGAAACTGATCTCCAACCCACAAATGGTGAAGCTCCATTCCTTTGACACCAAGATTCACAAGGTTAACACTCTTGTTTCGTACAAG AACGACGAAGACTCGGATGAAGAGCAGCAGTAG
AA sequence Show only first row Show all	>Lus10006436 pacid=23171955 polypeptide=Lus10006436 locus=Lus10006436.g ID=Lus10006436.BGIv1.0 annot-version=v1.0 MASKTAAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFAKVKKYGLPLLLTQDEGVKTFISNLNAQLSEWLEAGQLQRVVLVIMSKATGEVLERW NFSIETDGEVVEKGVSREKSDKEIMREIQAIMRQIASSITYLPCLDEQCVFDVLAYTDKEVAVPFTWIESDPKLISNPQMVKLHSFDTKIHKVNTLVSYK NDEDSDEEQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Lus10006436 [exp]	0	1
AT1G04030			unknown protein		Lus10029611 [exp]	1.0	0.9341
AT1G19080		PSF3, TTN10	TITAN 10, Partner of SLD5 3, G...		Lus10014848 [exp]	2.8	0.9087
					Lus10011118 [exp]	3.5	0.8965
AT5G35520		MIS12, ATMIS12	MIS12 HOMOLOGUE, ARABIDOPSIS M...		Lus10009016 [exp]	4.7	0.8986
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Lus10011376 [exp]	6.3	0.9237
AT1G03470			Kinase interacting (KIP1-like)...		Lus10005933 [exp]	7.4	0.9176
AT4G02800			unknown protein		Lus10022037 [exp]	8.7	0.9216
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10009764 [exp]	11.5	0.9112
AT1G54385			ARM repeat superfamily protein...		Lus10010672 [exp]	11.5	0.9125
AT1G77580			Plant protein of unknown funct...		Lus10042719 [exp]	11.8	0.8809

Compare expression of checked genes

Lus10006436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.