Plant FIBer expression Database

Lus10006438 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G26000 212 / 4e-63 Ribonuclease inhibitor (.1)
AT3G27290 150 / 1e-40 RNI-like superfamily protein (.1)
AT2G01620 102 / 4e-24 MEE11 maternal effect embryo arrest 11, RNI-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037060
[exp]
305 / 1e-98 AT3G26000 337 / 6e-112 Ribonuclease inhibitor (.1)
Lus10011378
[exp]
136 / 9e-38 AT3G26000 78 / 3e-17 Ribonuclease inhibitor (.1)
Lus10007930
[exp]
104 / 1e-24 AT2G01620 195 / 9e-61 maternal effect embryo arrest 11, RNI-like superfamily protein (.1)
Lus10013466
[exp]
84 / 1e-17 AT2G01620 174 / 6e-53 maternal effect embryo arrest 11, RNI-like superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G054600
[exp]
265 / 2e-83 AT3G26000 395 / 7e-135 Ribonuclease inhibitor (.1)
Potri.008G179800
[exp]
231 / 1e-70 AT3G26000 330 / 1e-109 Ribonuclease inhibitor (.1)
Potri.001G337300
[exp]
226 / 8e-69 AT3G26000 252 / 3e-79 Ribonuclease inhibitor (.1)
Potri.010G108600
[exp]
143 / 3e-38 AT2G01620 209 / 8e-66 maternal effect embryo arrest 11, RNI-like superfamily protein (.1)
Potri.008G133100
[exp]
64 / 4e-12 AT2G01620 68 / 2e-14 maternal effect embryo arrest 11, RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10006438 pacid=23171982 polypeptide=Lus10006438 locus=Lus10006438.g ID=Lus10006438.BGIv1.0 annot-version=v1.0
ATGGCTTTGAATTGTTCCCACCGGGTGGCGGAGGATAATTTAGCTTCCCGGCCTATGAGGATGGCCGGCGGTTGCTTTGGCGATCGGTGTTTGGTGGGTC
CGGGGAGGGACACCCGATGTGAATCACAGCAAGATGCAGACATTCTAGATCTCTTGCCTTCGGATCCTTTCGACATGGATATAACCACTACGGTTACTGC
AATCAGAGGCTGGCTAGAGGATTACTTCATATGGAACAATGAATTCACAATGCAGCAGCCGGATTTCCCTAGGTATGAGGCTAACTCGAGTTTTGTGGGT
CGATTTGATTATCATCGGTGTCGGTCTGTGGATAAGATGGAGATGGAGAAGGAGGATCTGAGTTTCGGGTGCAGTAATGCCTTTGGATTTTCGGATCATG
GTAAGGAGGAGGATTCTTTGATTTTGCGGGATGAATTGGCGGCAGATGAGATGAGTATTGCAGAATGTTGTTATTATGATGCTGATTTGGACTTTTTGTC
CGTTGAAATGGTCTGCACTTCACCGAACTCTGCAGTTCGGGACGACCGGTCTCTTTGGAGCAGTGTTTATATTGATCAACTTGGTCGCAATGGGTACGAG
TCTATGATGAAGAAGACAGAGAAGGCGAATCCGAGTTTCGGTTGCAATGCCTTTGGATTGGATCCCGGTGAGGACAAGGAAATACCGGGATTGAATTTGC
CGGATGACTTGTTGTGTGATCAGATGAGCTGTGATGGTGATCGAGACGAAGTCAATGTGTTCCATTCTGTACTGGACTTTGCGCTCGGGTATTTGGACCT
GAGTGAACTTCTAACTGTTGGCATGGTTTGTACTTCGCTGCACTCTGCAGTTCGCGACGACCCTTCGTTGTGGAGAAGTATTTACATTCATAAACCTCTT
AATGAGAAAATCACTGATGAAGTTCTTGTCCAACTAACGGATAGAGCTCAAGGTAATTTGGAACAGTTGACTTTGGTGGAGTGTCAATGGATCACTGATA
CGGGACTGAAGCATGTGCTTGTAAATAATCCAAAGCTGACCAAGCTGGGTGTGGCTGGATGCTCTAGAGTCAACATCAACAGCATAGTGGCGACCTTGAA
AGAGTTCAAGGATTCGGGCAAGATGGCGTTGAAGCACTTAAGGATAGGTGGAATCTACTGTGTGACGCAGGAGCACTACGAAGTGTTGAAGTCAGTCGTG
GATGGAGATGCCATCCTCGAGCAGAGGAAACCCAGGGTGCCCTGTTATTATAGCCGGGAGACTCAGTACACGGTATGCGACGACGATCGTGCCTTGGACA
TTGAAACTTGCCCAAAATGCCGCAACCACAAGTTGGTCTATGATTGTCCTGTGGAAAGCTGCCAGCAATGGAAGAACCATTCTGCTCAGGCTTGTAGAGC
TTGCATTCTTTGCATACGGCGGTGTGCTGAGTGCGGTTGCTGTATCAACAACAGCGAATACGTCGAGACTTTTCTTCTCGAGTATCTGTGTGCATCTTGT
GGAAGCGCCAGCTGA
AA sequence
>Lus10006438 pacid=23171982 polypeptide=Lus10006438 locus=Lus10006438.g ID=Lus10006438.BGIv1.0 annot-version=v1.0
MALNCSHRVAEDNLASRPMRMAGGCFGDRCLVGPGRDTRCESQQDADILDLLPSDPFDMDITTTVTAIRGWLEDYFIWNNEFTMQQPDFPRYEANSSFVG
RFDYHRCRSVDKMEMEKEDLSFGCSNAFGFSDHGKEEDSLILRDELAADEMSIAECCYYDADLDFLSVEMVCTSPNSAVRDDRSLWSSVYIDQLGRNGYE
SMMKKTEKANPSFGCNAFGLDPGEDKEIPGLNLPDDLLCDQMSCDGDRDEVNVFHSVLDFALGYLDLSELLTVGMVCTSLHSAVRDDPSLWRSIYIHKPL
NEKITDEVLVQLTDRAQGNLEQLTLVECQWITDTGLKHVLVNNPKLTKLGVAGCSRVNINSIVATLKEFKDSGKMALKHLRIGGIYCVTQEHYEVLKSVV
DGDAILEQRKPRVPCYYSRETQYTVCDDDRALDIETCPKCRNHKLVYDCPVESCQQWKNHSAQACRACILCIRRCAECGCCINNSEYVETFLLEYLCASC
GSAS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G26000 Ribonuclease inhibitor (.1) Lus10006438
[exp]
0 1
AT5G07250 ATRBL3 RHOMBOID-like protein 3 (.1.2) Lus10027436
[exp]
3.5 0.8572
AT5G08139 RING/U-box superfamily protein... Lus10023235
[exp]
4.0 0.8546
AT3G58840 PMD1 peroxisomal and mitochondrial ... Lus10010937
[exp]
6.3 0.8417
AT3G20300 Protein of unknown function (D... Lus10024308
[exp]
6.7 0.8504
AT2G36780 UDP-Glycosyltransferase superf... Lus10023939
[exp]
7.5 0.8308
AT5G18130 unknown protein Lus10005702
[exp]
9.5 0.8150
Lus10036648
[exp]
9.6 0.7834
AT5G50240 PIMT2, AtPIMT2 Arabidopsis thaliana protein-l... Lus10017776
[exp]
11.2 0.8267
AT1G07530 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARAB... Lus10016519
[exp]
11.4 0.8251
AT1G43850 SEU SEUSS transcriptional co-regul... Lus10029753
[exp]
11.5 0.8064

Lus10006438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.