Plant FIBer expression Database

Lus10006439 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67680 611 / 0 SRP72 RNA-binding domain (.1)
AT1G67650 568 / 0 SRP72 RNA-binding domain (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011379
[exp]
949 / 0 AT1G67680 773 / 0.0 SRP72 RNA-binding domain (.1)
Lus10037059
[exp]
828 / 0 AT1G67680 759 / 0.0 SRP72 RNA-binding domain (.1)
Lus10036924
[exp]
431 / 3e-145 AT1G67680 440 / 3e-149 SRP72 RNA-binding domain (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G216400
[exp]
719 / 0 AT1G67680 767 / 0.0 SRP72 RNA-binding domain (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08492 SRP72 SRP72 RNA-binding domain
Representative CDS sequence
>Lus10006439 pacid=23172008 polypeptide=Lus10006439 locus=Lus10006439.g ID=Lus10006439.BGIv1.0 annot-version=v1.0
ATGGCTCCAAAGTCGAAGGCGAAGCCTTCACCGGCGTCATCGCAGCCGCCTCCTGCGATCGAAGATCTGTTCACGAAACTCAATTCGCACATCGAGGGAT
CTAGCGATCCGAGCATCGAGCAATCGGAGCTGGAAAAGGCTGTCAGAGTCGCTGACCAAGTTCTATCGATTGCTCCTGGAGATGAAGACGCCATCCGATG
CAAAGTCGTGGCATTGATTAAGAATGACAGTTATGACAGTGCTCTTTCTGCGATTCGTGCTGCGTCCAAGCTTCAGCTTGATTTCAGTTTCGAACAGGCG
TATTGTTTATACAAGCAAAACAAACTGGATGAAGCACTGGAGTTGCTGAAAGGGCAGGAGAGAAATGATGAGACAATGTTGTTAGAAGCTCAGATTCTGT
TCCGTCTAGGGAAAATGGATGCTTGTATCGACGTCTACCAAAAGCTTCGGAAGTCCAAGCTCGACTCTTTGGAGATTAATCTCGCTGCAAGTTTGATTTT
AGCCGGGAGGTCGTCTGAAGTGCATGGCATGCTGGAGGCACAGCGGATCAAACCATCGAGCAGCTATGACTTGGCATTCAACACTGCCTGCTCATTGATT
GAAGTGAAGAAGTATGCAGAAGCTGAGCAACTATTGCAGGAAGCTAGAAGGATCGGCCAGGAGTCGTTACTGGATTCCAACTGGGCCGAAGAGGACATAG
AAATCGAATTGGCTCCGATAGCTGTCCAACTAGCATATGTTTCACAGCTTCTGGGAAGATCACAGGAAGCCATGGAAGCTTATGCTGAGGTTATTAGTCC
AAATCTGGCAGACGACTTGTCATCTCTGGCTGTGGCTGCAAACAACCTTGTTGCTGTAAGGGGTCCAAAAGAGGTGTCTGATAGCCTGAAGAAACTTGAT
CTCCTAAAGGAACAGGGTCCAGCAGAATACCGGCTTGCTCGAGGACTCGACAAGCTTTCTCCAAAGCAGAGGGAGACTATATATGCAAATAGAGTGCTTC
TACTTATCCATGCAAATAAGATGGATCAGGCTCGGGAACTCGTCTCTGCATTACCAGAGATGTTTGCTGACAGTGAGATGCCTGTACTGCTTCAAGCTGC
AGTGTTGGTCAGGGAGAAGAAGGCCGCTAAAGCGGAAGAAATCCTCGATAACTGTGCTGCAAAGTTCCCTGATAAGTCCAAGATCGCTCTTCTCGCGAGG
GCACAAATCGCTGCTGCCTCCGGTCACCATCAGATCGCTTCCGACTCCCTTTCGAGGGTACCTGACATCCAACACATGCCTGCCACCGTCGCTACCCTAG
TGGCATTGAAAGAGCGCGCTGGTGACATTGATGGTGCATCAGCAGTCCTCGACTCAGCAGTCAAATGGTGGTCGAACGCCATGACTGATGAAGACAGCAA
GCTGAACATCATAATGCAGGAGGCTGCTTCGTTCAAGGTGAGGCACGGTCGGGGAGAGGAAGCTGCTCGTCTCTACGAGGAGCTCCTACGAACCCACGAG
AGTGTCGATGCTATAGTCGGCCTAGTCAGCACCATAGCCCGTGTTGACATCGACAAGGCGGAACTTTACAAGAAGAAGCTGAAGCCCCTGCCCGGACTGA
AATCAATCGATGTCGAGAGTCTTGAGAAGACGTCTGGTGCTAAACAAGTCGAGGGCGCCTCCTTACGTGAACCGGCATTCAACAACGCCGAAGAGGGTAA
GAAGGAGAAGCAAAAGAAGAAGAGGAAGAGGAAGCCAAAGTACCCGAAAGGGTTCGACCCAGCGAATCCTGGTCCTCCCCCGGACCCCGAGAGGTGGCTA
CCGAAGAGGGAGAGATCGAGTTACAGACCAAAGAGGAAGGACAAGAGAGCAGCTCAAGTAAGAGGCTCTCAGGGTGCCGTATCTAGGGACAAGAATGAAG
CTGCTGCTGCTACTACGAGCTCCAATGCTCCGAAAGCGGCTGCTAGCAGCGCAAAATCATCGGCGCAGAATGCTGGTCCATCGAAACAGTCTTCGAAGTC
GTCAAAGAAGAAGTCGAGGAGGTGA
AA sequence
>Lus10006439 pacid=23172008 polypeptide=Lus10006439 locus=Lus10006439.g ID=Lus10006439.BGIv1.0 annot-version=v1.0
MAPKSKAKPSPASSQPPPAIEDLFTKLNSHIEGSSDPSIEQSELEKAVRVADQVLSIAPGDEDAIRCKVVALIKNDSYDSALSAIRAASKLQLDFSFEQA
YCLYKQNKLDEALELLKGQERNDETMLLEAQILFRLGKMDACIDVYQKLRKSKLDSLEINLAASLILAGRSSEVHGMLEAQRIKPSSSYDLAFNTACSLI
EVKKYAEAEQLLQEARRIGQESLLDSNWAEEDIEIELAPIAVQLAYVSQLLGRSQEAMEAYAEVISPNLADDLSSLAVAANNLVAVRGPKEVSDSLKKLD
LLKEQGPAEYRLARGLDKLSPKQRETIYANRVLLLIHANKMDQARELVSALPEMFADSEMPVLLQAAVLVREKKAAKAEEILDNCAAKFPDKSKIALLAR
AQIAAASGHHQIASDSLSRVPDIQHMPATVATLVALKERAGDIDGASAVLDSAVKWWSNAMTDEDSKLNIIMQEAASFKVRHGRGEEAARLYEELLRTHE
SVDAIVGLVSTIARVDIDKAELYKKKLKPLPGLKSIDVESLEKTSGAKQVEGASLREPAFNNAEEGKKEKQKKKRKRKPKYPKGFDPANPGPPPDPERWL
PKRERSSYRPKRKDKRAAQVRGSQGAVSRDKNEAAAATTSSNAPKAAASSAKSSAQNAGPSKQSSKSSKKKSRR

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G67680 SRP72 RNA-binding domain (.1) Lus10006439
[exp]
0 1
AT5G63840 PSL5, RSW3 RADIAL SWELLING 3, PRIORITY IN... Lus10033490
[exp]
2.0 0.9157
AT1G67680 SRP72 RNA-binding domain (.1) Lus10011379
[exp]
2.8 0.8720
AT3G54540 ABCF4, ATGCN4 ATP-binding cassette F4, gener... Lus10016184
[exp]
3.0 0.9106
AT1G13980 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBR... Lus10026627
[exp]
3.7 0.9137
AT5G65750 2-oxoglutarate dehydrogenase, ... Lus10031476
[exp]
6.5 0.8875
AT1G05520 Sec23/Sec24 protein transport ... Lus10021964
[exp]
6.6 0.8964
AT1G79930 AtHsp70-14, HSP... heat shock protein 91 (.1.2) Lus10037529
[exp]
7.1 0.8935
AT5G47400 unknown protein Lus10004740
[exp]
7.2 0.8573
AT5G57460 unknown protein Lus10004736
[exp]
8.4 0.8817
AT3G56640 SEC15A exocyst complex component sec1... Lus10038993
[exp]
8.8 0.8407

Lus10006439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.