Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26020 624 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT1G13460 622 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT4G15415 615 / 0 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G21650 603 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 575 / 0 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT3G09880 561 / 0 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G03470 537 / 0 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G25510 500 / 1e-174 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G54930 473 / 6e-164 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011381 [exp] 888 / 0 AT3G26020 643 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10032082 [exp] 662 / 0 AT4G15415 726 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10030002 [exp] 628 / 0 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10035321 [exp] 625 / 0 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10037057 [exp] 621 / 0 AT3G26020 707 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10036926 [exp] 617 / 0 AT3G26020 709 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10015144 [exp] 609 / 0 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10031536 [exp] 582 / 0 AT3G26020 724 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10014619 [exp] 573 / 0 AT4G15415 604 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G054300 [exp] 708 / 0 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G180000 [exp] 702 / 0 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.017G070100 [exp] 662 / 0 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.010G054400 [exp] 634 / 0 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G179900 [exp] 633 / 0 AT3G26020 731 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.014G157000 [exp] 620 / 0 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.002G226200 [exp] 603 / 0 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.016G098400 [exp] 550 / 0 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G122300 [exp] 542 / 0 AT3G09880 692 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G247100 [exp] 515 / 2e-180 AT5G25510 800 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01603 [flax] [poplar] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Lus10006440 pacid=23171973 polypeptide=Lus10006440 locus=Lus10006440.g ID=Lus10006440.BGIv1.0 annot-version=v1.0 ATGATCAAGCAAATCCTGGGAAGGCTTCCTAGGAAGCCATCCAAATCATCATCAGATAATGCTGTTTGTTCAGACATTACTACATCTCCACCTGGTACTG AATCTGCTTCATTACACGTGGTTAGTACTAGTACTAGTAGTACCAGTAATGGTTCCAAATCAAACTCGAAACCAAGTTCGAATTTGACAGCTGAGCCTCT ACCTGGACTTAGAGATTCTTCTTCAGCTCAAATATCAGACAAGCAGAAGTTGTTAGTAAGCAAGCTGAGCTTGTGCTGCACGCTTTATGACTTCGCCGAT CCAACAAAGAATCTGAAGGAAAAGGACATCAAGAGGCAGACTTTGCTCGACCTTGTTGACTACCTTGCCACTTCTTCTTCTGCAAATGGGAAGTTCAGTG ATTCCTTACTGCAAGAGATGGTAAAGATGGTGTCTTTGAATCTGTTCAGGCCACTTATTAGCCATCCTCGCGAGAGCAAGACCATGGAAGGGTTTGACAT GGAAGAAGATGAGCCATTGATGGACCCTTCATGGCCACACTTGCAGATTGTCTACGAGTTCTTCCTCCGGTTCGTTGCTTCCCCTGAGACGGATGCAAAG CTTGCCAAGAGGTACATCGACCAGTCCTTCGTGCTGAAGCTACTGGACCTCTTCGACTCCGAGGATCCGAGGGAGAGGGAGTACTTGAAGACGATCCTGC ATCGAATCTACGGGAAGTTCATGGTGCACAGACCATTCATTAGGAAAGTGATCAACAACATCTTCTTCAGGTTCATCTACGAGACAGAGAAGCATAATGG GATTGCTGAGCTTCTGGAAGTGCTGGGGAGCATAATCAATGGCTTTGCGATCCCTCTCAAGGAAGAGCACAAGTCGTTCCTCGTTCGAGCTCTGATTCCT CTTCATAAGCCGAAATGCCTGCCGGTGTACCATCAGCAGCTGTCTTACTGCATTACTCAGTACGTTGAGAAAGACTGCAGGCTTGCTGATGCTGTCATAA AGGGACTTCTCAAGTATTGGCCTGTCACTAACAGTTCTAAGGAAGTCATGTTTCTTGGTGAGCTTGAAGAAGTGTTGGAAGCCACCCAGCCTGCTGAGTT CCAGAAGTGTATGGTTCCCTTGTTCCATCGGATCGCTCGATGCTTGAGCAGTTCGCATTTTCAGGTGGCAGAAAGAGCATTATACTTATGGAGCAACGAC CACATCGACACATTAATCCGACAAAACCGGAAGGTCATACTGCCGATCATCTTCCCCGCATTGGAGAAGAATGCTCGCAGCCACTGGAGTCCAGTGGTTC AAAGCTCAACAGTCAACGTAAAAAAGATCTTCATCGACATTGATCCTCAGCTCATCGAACAGTGCTTAAACGAACTCAAAGAACAGGAAGAGAAGGCAGA GGAGGAAAGATTGAAGCATGAAGCTACATGGAAACGCTTAGAACAGATCGCTGCAACATAA
AA sequence Show only first row Show all	>Lus10006440 pacid=23171973 polypeptide=Lus10006440 locus=Lus10006440.g ID=Lus10006440.BGIv1.0 annot-version=v1.0 MIKQILGRLPRKPSKSSSDNAVCSDITTSPPGTESASLHVVSTSTSSTSNGSKSNSKPSSNLTAEPLPGLRDSSSAQISDKQKLLVSKLSLCCTLYDFAD PTKNLKEKDIKRQTLLDLVDYLATSSSANGKFSDSLLQEMVKMVSLNLFRPLISHPRESKTMEGFDMEEDEPLMDPSWPHLQIVYEFFLRFVASPETDAK LAKRYIDQSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKVINNIFFRFIYETEKHNGIAELLEVLGSIINGFAIPLKEEHKSFLVRALIP LHKPKCLPVYHQQLSYCITQYVEKDCRLADAVIKGLLKYWPVTNSSKEVMFLGELEEVLEATQPAEFQKCMVPLFHRIARCLSSSHFQVAERALYLWSND HIDTLIRQNRKVILPIIFPALEKNARSHWSPVVQSSTVNVKKIFIDIDPQLIEQCLNELKEQEEKAEEERLKHEATWKRLEQIAAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26020			Protein phosphatase 2A regulat...		Lus10006440 [exp]	0	1
AT3G26020			Protein phosphatase 2A regulat...		Lus10011381 [exp]	1.0	0.8614
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10033122 [exp]	8.8	0.7818
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10039598 [exp]	19.7	0.7894
AT3G24240			Leucine-rich repeat receptor-l...		Lus10011756 [exp]	38.7	0.7872
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10040387 [exp]	42.3	0.7265
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10017555 [exp]	43.4	0.7356
AT5G08130	bHLH	BIM1, bHLH046	basic helix-loop-helix (bHLH) ...		Lus10013502 [exp]	47.9	0.7036
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Lus10029110 [exp]	55.3	0.7803
AT3G61590		HWS, HS	HAWAIIAN SKIRT, Galactose oxid...		Lus10007855 [exp]	56.6	0.7123
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10031289 [exp]	59.7	0.7557

Compare expression of checked genes

Lus10006440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.