Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57850 474 / 5e-168 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT3G05190 83 / 4e-17 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT5G27410 81 / 2e-16 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011382 [exp] 739 / 0 AT5G57850 476 / 2e-168 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) Lus10013676 [exp] 373 / 4e-123 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10035342 [exp] 76 / 1e-14 AT5G27410 910 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) Lus10029984 [exp] 63 / 2e-10 AT5G27410 869 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G039000 [exp] 535 / 0 AT5G57850 473 / 2e-167 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) Potri.011G115000 [exp] 379 / 7e-131 AT5G57850 365 / 1e-125 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) Potri.005G039100 [exp] 84 / 2e-17 AT5G27410 882 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01063 [flax] [poplar] Aminotran_4 Amino-transferase class IV
Representative CDS sequence Show only first row Show all	>Lus10006441 pacid=23172011 polypeptide=Lus10006441 locus=Lus10006441.g ID=Lus10006441.BGIv1.0 annot-version=v1.0 ATGGCTTCTTTCTCGGCTTCTTTCCTCCCGAAACCTCACCAACTGCCGGCGGCGAAATCCCCCAATCTCTCACAACATTCGCTGCCGCCGGAAGTGCGAT CGGGCCTTCCCTTTCAGATTTCCGACAAGTTTCAGTTCCTGCGAAATACGTCGATTAGCATAAACAGTCATCCAGTTCAAGCTGTGATTGATTCTGGCGT AGAAGTTTCTGATGTCACGATTCTTACAGCTTCTGAGGTTATGGAGAATTTGAGGAGAAACAGGTCAAAAATCGAAGGAAACCAGCGATTCTTGGCAATG TACTCGAGCATTTATGGCGGAATCACAACCGATCCAGCAGCCATGGTTATCCCCATGGATGACCACATGGTCCACCGTGGCCACGGTGTCTTTGACACTG CTGCTATAATGAACGGACACCTCTACGAGCTGGACCAGCACCTCGACCGCATTCTAAGGTCAGCCTCCATGGCGAAGATCACACTTCCGTTCGACAGAGA CACCATAAGGAGAATACTAATCGAGACTGTTCACGCCTCGAAATGTCGAGAAAGGGGATCTCTAAGGTACTGGCTCTCTGCAGGACCGGGAGACTTCCAG CTATCTCCTTCCGGCTGTCATCAGCCGGCACTTTACGCAATCGTGGTTGAGGACCGGTCTCCTTTCGATTCGAGAGGTGTCAAGGTGGTTACCTCCTCGA TTCCCATAAAGCCTCCACAATTTGCCACCACGAAGAGCGTCAACTACCTCCCCAACGTGCTGTCAAAGATGGAAGGGGAAGAGAAGGGCGCGTTTGCTGC CGTTTGGCTGGACGAGTTAGGGTTCGTGGCCGAAGGTCCTAACATGAATGTAGCGTTTGTTTCTAACAATGAGCTTGTGATGCCGAAGTTCGATAAGATC TTGAGTGGGTGCACTGCAAAAAGAGTGTTGAAGCTAGCTGAAGGATTGATGAAGAAAGGTGAGCTTCGTGGGATAAAGGTGAGGGATGTGACTGTGGAAG AAGGGAAAAAGGAAGCAGATGAAATGATGCTTATTGGGAGTGGGATTCTTGTTCGGCCTGTGGTTCAGTGGGACGAACAGTTGATTGGTGATGGAAAGGA AGGTCCCGTAGCAAAAGCTCTGCTAGATTTCATACTGGAGGACATGAGATCTGGCCCTGCTTCAGTTCGAGTACCGATCCCGTGA
AA sequence Show only first row Show all	>Lus10006441 pacid=23172011 polypeptide=Lus10006441 locus=Lus10006441.g ID=Lus10006441.BGIv1.0 annot-version=v1.0 MASFSASFLPKPHQLPAAKSPNLSQHSLPPEVRSGLPFQISDKFQFLRNTSISINSHPVQAVIDSGVEVSDVTILTASEVMENLRRNRSKIEGNQRFLAM YSSIYGGITTDPAAMVIPMDDHMVHRGHGVFDTAAIMNGHLYELDQHLDRILRSASMAKITLPFDRDTIRRILIETVHASKCRERGSLRYWLSAGPGDFQ LSPSGCHQPALYAIVVEDRSPFDSRGVKVVTSSIPIKPPQFATTKSVNYLPNVLSKMEGEEKGAFAAVWLDELGFVAEGPNMNVAFVSNNELVMPKFDKI LSGCTAKRVLKLAEGLMKKGELRGIKVRDVTVEEGKKEADEMMLIGSGILVRPVVQWDEQLIGDGKEGPVAKALLDFILEDMRSGPASVRVPIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57850			D-aminoacid aminotransferase-l...		Lus10006441 [exp]	0	1
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10003810 [exp]	1.0	0.9571
AT3G53140			O-methyltransferase family pro...		Lus10023892 [exp]	1.4	0.9557
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10015921 [exp]	2.4	0.9478
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10022186 [exp]	5.3	0.9396
AT5G57850			D-aminoacid aminotransferase-l...		Lus10011382 [exp]	5.5	0.9361
AT5G16340			AMP-dependent synthetase and l...		Lus10013772 [exp]	6.0	0.9296
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10013773 [exp]	6.3	0.9283
AT2G34070		TBL37	TRICHOME BIREFRINGENCE-LIKE 37...		Lus10015309 [exp]	7.0	0.9372
AT5G47390	MYB		myb-like transcription factor ...		Lus10004248 [exp]	7.3	0.9230
AT1G22540			Major facilitator superfamily ...		Lus10016932 [exp]	8.0	0.9187

Compare expression of checked genes

Lus10006441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.