Plant FIBer expression Database

Lus10006442 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67700 302 / 9e-105 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011383
[exp]
467 / 1e-169 AT1G67700 308 / 6e-107 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G053600
[exp]
317 / 2e-110 AT1G67700 316 / 4e-110 unknown protein
PFAM info
Representative CDS sequence
>Lus10006442 pacid=23171980 polypeptide=Lus10006442 locus=Lus10006442.g ID=Lus10006442.BGIv1.0 annot-version=v1.0
ATGGAGGTGGGCATGTCACTAAACGCGCTGGTGAGGTTGCCATTATCGACCTCAGCGAGAACTCAAGAAGAACATGGGTTGTTCAAGCTCAAGAACTCGC
CTTTCATGGCGCAGAGATGTAGTGGACAAACTCGGCGGAGCAATTCTTTGATGGTAGTTGAAGCTAAGGGGAAAAGAGGGATGACAAATCGCCAGTTTCC
CAAGCCTCCTTTGTTGCCCAAGGTTGAAGACGATGGAAATCCCAAGTTCGTCATCTTCATCCGCATGGCCAATTTTAACTTTTGGTCCCCACTCAGCATC
ATTTCGGGCGGTACCACAGCCAAAATCATGGTTGCAGCAAAGGACAACTTCCTGGGCAAGTACATCTATAAAGACACCCTTGCCCGAAACCTTGCTACAC
TTATCTACAGAGATGAGAAGGAGATAAAGAAGACTGCAGTTAGGCAACATCGAATGTTGCGGTCAGCAACCGAGTTCAAATACGGTTACAAGCTTGTCGA
AAATGCAAACATACGAGCTGCCCTTTCGACAAACAATGTCATCGAGCTTCCAACGCAAGACAAGCTCAAAACAGTGGTTGACAAAGTTAGAGACTTCTTT
GGCGACGCAAAGGAGTCCTTTGGGAAGTTTACATCGCTCGATTCGACTGCAGAAGCTGAAGAACTGCAGAACAAAGTTGCAGAAGGACAGGAGAAAGCAA
AGTGA
AA sequence
>Lus10006442 pacid=23171980 polypeptide=Lus10006442 locus=Lus10006442.g ID=Lus10006442.BGIv1.0 annot-version=v1.0
MEVGMSLNALVRLPLSTSARTQEEHGLFKLKNSPFMAQRCSGQTRRSNSLMVVEAKGKRGMTNRQFPKPPLLPKVEDDGNPKFVIFIRMANFNFWSPLSI
ISGGTTAKIMVAAKDNFLGKYIYKDTLARNLATLIYRDEKEIKKTAVRQHRMLRSATEFKYGYKLVENANIRAALSTNNVIELPTQDKLKTVVDKVRDFF
GDAKESFGKFTSLDSTAEAEELQNKVAEGQEKAK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G67700 unknown protein Lus10006442
[exp]
0 1
AT1G67700 unknown protein Lus10011383
[exp]
1.0 0.9896
AT4G02725 unknown protein Lus10006915
[exp]
1.4 0.9779
AT5G64040 PSAN, PSI-N photosystem I reaction center ... Lus10003849
[exp]
2.4 0.9702
AT1G51400 Photosystem II 5 kD protein (.... Lus10009950
[exp]
3.3 0.9605
AT2G26340 unknown protein Lus10000477
[exp]
4.9 0.9667
AT4G39710 PnsL4, FKBP16-2 Photosynthetic NDH subcomplex... Lus10016811
[exp]
5.2 0.9636
AT3G10405 unknown protein Lus10037959
[exp]
7.1 0.9572
AT1G18170 FKBP-like peptidyl-prolyl cis-... Lus10038954
[exp]
7.1 0.9661
AT1G65260 VIPP1, PTAC4 VESICLE-INDUCING PROTEIN IN PL... Lus10025601
[exp]
8.0 0.9494
AT1G12250 Pentapeptide repeat-containing... Lus10032239
[exp]
8.7 0.9590

Lus10006442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.