Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26310 283 / 4e-89 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26210 275 / 2e-86 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT3G26300 268 / 1e-83 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26330 267 / 3e-83 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26320 266 / 1e-82 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT1G13110 263 / 1e-81 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT4G31500 262 / 2e-81 SUR2, RNT1, RED1, ATR4, CYP83B1 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) AT5G57260 260 / 2e-80 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT1G13080 260 / 2e-80 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT4G36220 252 / 4e-77 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016601 [exp] 331 / 2e-107 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10012879 [exp] 310 / 4e-99 AT3G26330 409 / 6e-138 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10024315 [exp] 303 / 5e-97 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10039063 [exp] 304 / 1e-96 AT3G26300 392 / 3e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10038796 [exp] 300 / 9e-96 AT3G26300 364 / 5e-121 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10030924 [exp] 293 / 5e-93 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10017961 [exp] 292 / 3e-92 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10013194 [exp] 289 / 3e-91 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10031674 [exp] 287 / 3e-90 AT3G26300 399 / 3e-134 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G090000 [exp] 369 / 2e-122 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.015G086000 [exp] 368 / 4e-122 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.012G089900 [exp] 363 / 3e-120 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.008G223500 [exp] 311 / 6e-100 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.016G137600 [exp] 300 / 2e-95 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.002G025300 [exp] 292 / 7e-93 AT4G31500 519 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.016G137400 [exp] 290 / 1e-92 AT3G48310 366 / 4e-123 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.015G085800 [exp] 289 / 2e-91 AT3G48270 479 / 7e-166 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.002G025425 [exp] 289 / 2e-91 AT4G31500 520 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.015G085600 [exp] 288 / 5e-91 AT3G48270 378 / 1e-126 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10006443 pacid=23172007 polypeptide=Lus10006443 locus=Lus10006443.g ID=Lus10006443.BGIv1.0 annot-version=v1.0 ATGGACTTCCCAACTCTCTCAATCCTCCTCTTTCTAATCCTCACCGCCACCATCGCATACCTTCACCTCACCAAAAACCCACCACCACAATCCCCTCCAC CGCCACCCCCGTCGCCACCACACCCTCTCCCCATCATCGGCCACCTCCACCACCTCCTCTTCTCCGGCGACGACTCACTACCCCACGTCCAACTTGCCCG GCTCGCAACCCAACTCGGCTCGCCCATAATCCGCCTCCAACTCGGCCGAGTCAACACCGTGGTGGTCTCGTCATCTCAGCTGGCTCGCCACGTCCTCAAG GCGAACGACCACGTGTTCGCCAACCGGCCTCAGCTGGTATCGGCTCAGTACCTTTCGTTCGGATGCTCTGACGTCACGTTCTCCCCCTATGGGGCCTACT GGCGCCACGTCAGGAAGATATGCGTGTTCGAGTTGCTCAGTCCCCGCCGAGTCCACTCGTTCCAGCAGGTGAGGAGGGAAGAAGTGGACCGGATGGTGGC AGCCGTCGCGAAAAACTCTGGCAAGGATACCGACGTGACATGGTTGGTGTTCACGTTAGCGAATGACGTTCTGTGCAGGGTAGCATTCGGTAAAAGATTC GTCAAAAGAGTTGCATCAATAACCACCAGAGAGGCAACGAATAAGAAAAAGGAGCTGGTGGAGGTGTTAACAGAGACCCAAGAGTTGTTTGCCGGTTTTT GCTTAGATGATTTCTTCCCAGGGTGGGAATGGGTCACGAATCGGTTGACTGGGTACCGAAAGAGATTAATGAAGAACTTGGATGACTTGAAGGAAGTTTG TGATGAGATCATAGAGGAGCACTTAAAGAAGAAGAAGGACCATTTGGGACATGATGAGAACTATAAGGACTTTGTTGATGTTTTGCTGGATGTTCAGAAA AGGGATGATCTTGAGGTTTCCATCACGGATGATAATCTCAAAGCACTTGTCTTGGACATGTTCGTAGCGGGGACAGACACGTCATCAGCTACACTAGAAT GGACAATGACAGAGCTAGCAAGGCATCCAACATTTCTCAGCAAGGCTCAAGCCGAGATTCGGAGCATTATAGGGAAACAAGCTCGAGTCGAAGAGGGGCA TCTCCGACATTTCACCTACACAAAGGCCGCAATCAAGGAAGCCATGAGGTTACACCCTCCGGTCCCACTCCTCGTGCCTCGGGAGTCCATGGAGGATTGT GTCCTTGATGCTTACTATGTACCGGCCAGGACGAGAGTTCTAGTCAACAGCTATGCTATCGGTAGGGATCCGGAGTTGTGGGAGAATGCTACTGAGTATA GGCCCGAGAGGTTTCTGGACGAGGATGAGATTGACTTCCATGATCAGGAGTTCAGGTTTGTACCGTTCGGAGGAGGCAGGAGAGGGTGTCCTGGGTTCGC ATTCGGGCTGGCTACTGTTGAGATTGCGCTGGCGAGGTTGCTGTACCATTTCGACTGGGAACTGCCACTTGGAGTTGGGGCTGAGGATGTTGATTTGAGA GAAGTTTTCGGGCTTGCTACGAGGAAGAAGACTTCGCTTGTTCTTGTGCCAAAAATTAGGGAAGGATATGAGTTCAAAGAGGAAATGGTACCATCTGTGT AG
AA sequence Show only first row Show all	>Lus10006443 pacid=23172007 polypeptide=Lus10006443 locus=Lus10006443.g ID=Lus10006443.BGIv1.0 annot-version=v1.0 MDFPTLSILLFLILTATIAYLHLTKNPPPQSPPPPPPSPPHPLPIIGHLHHLLFSGDDSLPHVQLARLATQLGSPIIRLQLGRVNTVVVSSSQLARHVLK ANDHVFANRPQLVSAQYLSFGCSDVTFSPYGAYWRHVRKICVFELLSPRRVHSFQQVRREEVDRMVAAVAKNSGKDTDVTWLVFTLANDVLCRVAFGKRF VKRVASITTREATNKKKELVEVLTETQELFAGFCLDDFFPGWEWVTNRLTGYRKRLMKNLDDLKEVCDEIIEEHLKKKKDHLGHDENYKDFVDVLLDVQK RDDLEVSITDDNLKALVLDMFVAGTDTSSATLEWTMTELARHPTFLSKAQAEIRSIIGKQARVEEGHLRHFTYTKAAIKEAMRLHPPVPLLVPRESMEDC VLDAYYVPARTRVLVNSYAIGRDPELWENATEYRPERFLDEDEIDFHDQEFRFVPFGGGRRGCPGFAFGLATVEIALARLLYHFDWELPLGVGAEDVDLR EVFGLATRKKTSLVLVPKIREGYEFKEEMVPSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26310		CYP71B35	"cytochrome P450, family 71, s...		Lus10006443 [exp]	0	1
AT5G22260		MS1	male sterility 1, RING/FYVE/PH...		Lus10030773 [exp]	1.4	0.8588
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10000989 [exp]	2.2	0.8957
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020722 [exp]	2.4	0.8475
AT4G04980			unknown protein		Lus10018473 [exp]	2.6	0.8417
					Lus10025700 [exp]	4.9	0.8521
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031175 [exp]	5.5	0.8569
AT3G47570			Leucine-rich repeat protein ki...		Lus10017400 [exp]	9.7	0.8503
AT3G55240			Plant protein 1589 of unknown ...		Lus10003293 [exp]	11.5	0.8182
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10005245 [exp]	11.7	0.7951
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10001619 [exp]	11.8	0.7720

Compare expression of checked genes

Lus10006443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.