Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27670 113 / 5e-31 HSP21 heat shock protein 21 (.1) AT4G25200 67 / 1e-13 ATHSP23.6-MITO mitochondrion-localized small heat shock protein 23.6 (.1) AT5G51440 63 / 3e-12 HSP20-like chaperones superfamily protein (.1) AT1G52560 61 / 3e-11 HSP20-like chaperones superfamily protein (.1.2) AT2G29500 40 / 0.0002 HSP20-like chaperones superfamily protein (.1) AT1G53540 40 / 0.0004 HSP20-like chaperones superfamily protein (.1) AT4G10250 39 / 0.0008 ATHSP22.0 HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011385 [exp] 308 / 8e-108 AT4G27670 133 / 9e-39 heat shock protein 21 (.1) Lus10022322 [exp] 111 / 3e-30 AT4G27670 85 / 3e-20 heat shock protein 21 (.1) Lus10014876 [exp] 76 / 2e-17 AT4G27670 71 / 9e-16 heat shock protein 21 (.1) Lus10031154 [exp] 54 / 1e-08 AT4G25200 224 / 1e-74 mitochondrion-localized small heat shock protein 23.6 (.1) Lus10024225 [exp] 50 / 3e-07 AT1G52560 197 / 4e-63 HSP20-like chaperones superfamily protein (.1.2) Lus10023653 [exp] 50 / 3e-07 AT1G52560 210 / 5e-68 HSP20-like chaperones superfamily protein (.1.2) Lus10031730 [exp] 48 / 1e-06 AT4G25200 215 / 3e-69 mitochondrion-localized small heat shock protein 23.6 (.1) Lus10025005 [exp] 44 / 3e-05 AT5G12020 166 / 2e-53 17.6 kDa class II heat shock protein (.1) Lus10026262 [exp] 44 / 3e-05 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G053400 [exp] 182 / 2e-57 AT4G27670 141 / 2e-41 heat shock protein 21 (.1) Potri.012G022400 [exp] 102 / 8e-27 AT4G27670 221 / 7e-73 heat shock protein 21 (.1) Potri.003G109200 [exp] 56 / 2e-09 AT4G25200 191 / 2e-61 mitochondrion-localized small heat shock protein 23.6 (.1) Potri.015G005801 [exp] 55 / 2e-09 AT4G27670 0 / 1 heat shock protein 21 (.1) Potri.001G192600 [exp] 54 / 7e-09 AT1G52560 191 / 8e-61 HSP20-like chaperones superfamily protein (.1.2) Potri.003G076000 [exp] 54 / 1e-08 AT4G25200 130 / 7e-38 mitochondrion-localized small heat shock protein 23.6 (.1) Potri.010G175200 [exp] 47 / 1e-06 AT1G53540 107 / 5e-30 HSP20-like chaperones superfamily protein (.1) Potri.006G223900 [exp] 42 / 9e-05 AT5G12020 154 / 8e-49 17.6 kDa class II heat shock protein (.1) Potri.009G039200 [exp] 39 / 0.0008 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 39 / 0.0009 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10006444 pacid=23171959 polypeptide=Lus10006444 locus=Lus10006444.g ID=Lus10006444.BGIv1.0 annot-version=v1.0 ATGTCTCAAGTCCTGTCAAACTTAAGCCTCTCAACGTCCCTCACCTCGAGCAGAGTTTCAAAGCCATGGCTAAGCATGAAGAGTACCCCAGCAAGCTCCT CCAGGTTCTGCGCCAATGCCGTGGCGCCAGATGGCAGCAGGAGCAGCAACTTGGATCATTTACAGAGAGCCAATGTCAGTAGCAAGCAGCAACCCAGAAG GAAAGTTGCTTCCTCTGCTCCAATAGGGTTATGGGACAGATTTCCAACGGCAAGAACAGTCCAGCAGATGATGGACACAATGGAGAGGCTCGTGGAAGAC GACCCATTTGCGGATGAAATCAGAGGTGGCCGGAGTTACAGGGCACCATGGGAGATCAAAGAAGGTGAAGGTGAGTACAAACTGAGATTCGACATGCCTG GAATGACGAAGCGAGACGTGAAGATTTGGGTCGAGGAGAAGATGCTAGTTGTGAAAGCTGAGAAGAAGAAGAACAAAGATGGAGATGGAGAAGAAGAGTG GAAGTATGGGAAGTATGGTTTCAGGATAGCTTTGCCTGAGAATGTTGAGTTTGAGAAGATTAAGGCTGAGGTTAGAGATGGGGTTTTGTATTTGAGTGTT CCCAAGGCTAGTTCCAGAGGCAATGTGTTTGATATTAGTGTCGATTGA
AA sequence Show only first row Show all	>Lus10006444 pacid=23171959 polypeptide=Lus10006444 locus=Lus10006444.g ID=Lus10006444.BGIv1.0 annot-version=v1.0 MSQVLSNLSLSTSLTSSRVSKPWLSMKSTPASSSRFCANAVAPDGSRSSNLDHLQRANVSSKQQPRRKVASSAPIGLWDRFPTARTVQQMMDTMERLVED DPFADEIRGGRSYRAPWEIKEGEGEYKLRFDMPGMTKRDVKIWVEEKMLVVKAEKKKNKDGDGEEEWKYGKYGFRIALPENVEFEKIKAEVRDGVLYLSV PKASSRGNVFDISVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10006444 [exp]	0	1
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10014876 [exp]	2.0	0.9662
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	3.0	0.9513
AT1G52560			HSP20-like chaperones superfam...		Lus10024225 [exp]	3.5	0.9667
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10011385 [exp]	7.2	0.8895
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10039134 [exp]	8.7	0.9172
AT5G65530			Protein kinase superfamily pro...		Lus10012727 [exp]	8.9	0.9454
AT5G56990			unknown protein		Lus10029528 [exp]	10.5	0.9424
AT3G10020			unknown protein		Lus10002842 [exp]	10.5	0.9046
					Lus10003825 [exp]	11.5	0.9424
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10041615 [exp]	12.0	0.8778

Compare expression of checked genes

Lus10006444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.