Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47110 433 / 4e-139 Leucine-rich repeat protein kinase family protein (.1) AT3G47570 426 / 8e-137 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 422 / 4e-135 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 418 / 2e-133 EFR EF-TU receptor (.1) AT3G47090 412 / 2e-131 Leucine-rich repeat protein kinase family protein (.1) AT5G39390 335 / 2e-107 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 293 / 7e-86 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G24130 277 / 4e-81 Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 251 / 9e-72 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G07180 248 / 1e-70 ERL2 ERECTA-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011388 [exp] 818 / 0 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 813 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 811 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 758 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10016896 [exp] 695 / 0 AT3G47570 714 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 695 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 677 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030847 [exp] 664 / 0 AT3G47570 746 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 660 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007866 [exp] 538 / 5e-180 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 520 / 8e-173 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 516 / 9e-171 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 498 / 3e-164 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 497 / 7e-164 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G020000 [exp] 496 / 7e-163 AT3G47570 816 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 493 / 2e-162 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 490 / 2e-161 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 481 / 1e-157 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 478 / 2e-156 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10006445 pacid=23172001 polypeptide=Lus10006445 locus=Lus10006445.g ID=Lus10006445.BGIv1.0 annot-version=v1.0 ATGATTCTATTTTATTTTTGCGATTGGTATGGTGTGTCTTGCTCTAAAAGACATTATGGCAGAGTCACTGCCTTAGAGTTGCCATCTCAAGGACTCTCCG GCTCTATCTCAAAGCACATTGGCAATCTTAGCTTCCTGAAAGCTCTACATCTCTTCAACAACAGCTTCGTTGGGGAATTACCTCCAGCAACTGGCTACCT TCGCAGATTGCAAGTGCTAGCGCTTTCCAACAATTCGCTTACTGGTGAGATTCCATTCAACAACTCAGAATGCTCTGCTCTTACTTGGTTCAGTGTGGAT CATAATAAGCTGGTGGGAGAATTGCCATGGCAATTCGGTCGATTGACGAAACTCCAAGTGTTATCCGTACGCGATAACCAGTTGAGGGGGAGAATTCCTG CTACTCCAGGCCGATTAAAGAGCATTCAGGTACTAGTGTTTCAGCGTAAAGTCATGACCCTCACCTCTTTGACACTTACTCTAGACTTGGCAGAAAATCA ATTCACAGGGGCCCTTCCCATGGAGGTGGGGAACCTGAAAAACTTGGGTTATTTGAATTTATCGCACAATATGTTGTCAGGGTCCATTCCAAATAGTTTG GGTAATTGTATGAGCCTAGAGTCTCTTTATTTGGAAAGCAATAGTCTACAAGGTGTCATTCCTTCTTCTTTGAGTTTATTGAGAGGTATTCGAGAGTTAG AATTTTCCTCCAACAACTTATCTGGTCAAATCCCAAAATTCTTAGAGCTTATGAATATTTCGGACCTTTTGAATTTGTCGAATAATAATTTCGACGGTGA AGTGCCTACACAAGGAGTCTTCAAAAACAAAAGTATTATTTCACTTTTTGGAAATAGCAAGCTTTGTGGGGGAATTGCTGCACTTAAACTTCCGCCATGT AACTTCCCGGGACACTCAAATAAGACATTAAGTCTTATGTGGAAGATCGTTATATCAATAATTTCGGCTCTACTCTTTTTTACCATAATTGGTTCGTGCT TCATCATCTTATGGATTAAAAAACGAGGAAGACACAATGCAGTTTTAACGAATGATCCCAAATTACTGCAATCGTCCTACCAAAGGCTTTTCAAAGTTAC AGATGGTTTATCTTCAGCAAATCAGATTGGTGTTGGTAGCTTTGCCACAGTCTACAAGGGTGTCCTTGATGATATTTCTGAGATCAATATCAAAATTGCC GTGAAAGTATTCAACCTTCAGCTTCGTGGTGCTTCCAAAAGTTTTATGGCAGAATGTGAAGCGTTGAAGAACATTAGACACAAAAATCTTGTGAAGATAA TAACAGTATGTTCAAGTGTTGATTATGAAGGGAATGATTTTAAGGCTCTCATTTATGACTTCTTGGCTAATGGGAGTTTAGAAGACTGGCTCCATCGGCC TATTGAAAGAATAGGCGACTCTACAACAACGAGCTTGAATTTCATCCAGAGGCTAAATGTTGCTATTGATATAGCTTCCGCGGTGGATTACTTTCACAAT AACTGTGGTACGCCAATTGTTCATTGTGATCTCAAGCCTAGCAATGTACTTCTCGACGAGGATATGGTGGCTCATGTTGGTGATTTTGGATTGGCACGGT TCCTTTTGATGGTTGAGAATCCCTCTTCAAGTACAATTGGTATAAAGGGAACCATTGGCTATGCACCTCCAGTCTCGATACAAGGTGACATCTATAGTTA TGGTATTCTTTTACTCGAATTATTTACTGGGAAGAGACCAACCGATGAGTCCTTTAGAGACGGATTAAGCCTTCATAATGTTGTAATGAGCGCTTTGTCA GAACAACACACATTCGAAGTTGTCGATCCAATTTTACACAACGAACTACTTCATAGGTTGACAACCCATCACAACAATACAAGTAGCAGCTCAGATGAAG CAAGAAAGGACCTAGAGGAGGTAATGAGTTCCATTCTCAAAATTGGCGTTTCGTGTTCTTTAAACATCCCAGAAGAGAGAATTAGTATGGGCGAAGTTTT ATCCAGACTTACCGCTGTGAAGAAAAAGGTATGTCCAGTTGACAGGAGGTAG
AA sequence Show only first row Show all	>Lus10006445 pacid=23172001 polypeptide=Lus10006445 locus=Lus10006445.g ID=Lus10006445.BGIv1.0 annot-version=v1.0 MILFYFCDWYGVSCSKRHYGRVTALELPSQGLSGSISKHIGNLSFLKALHLFNNSFVGELPPATGYLRRLQVLALSNNSLTGEIPFNNSECSALTWFSVD HNKLVGELPWQFGRLTKLQVLSVRDNQLRGRIPATPGRLKSIQVLVFQRKVMTLTSLTLTLDLAENQFTGALPMEVGNLKNLGYLNLSHNMLSGSIPNSL GNCMSLESLYLESNSLQGVIPSSLSLLRGIRELEFSSNNLSGQIPKFLELMNISDLLNLSNNNFDGEVPTQGVFKNKSIISLFGNSKLCGGIAALKLPPC NFPGHSNKTLSLMWKIVISIISALLFFTIIGSCFIILWIKKRGRHNAVLTNDPKLLQSSYQRLFKVTDGLSSANQIGVGSFATVYKGVLDDISEINIKIA VKVFNLQLRGASKSFMAECEALKNIRHKNLVKIITVCSSVDYEGNDFKALIYDFLANGSLEDWLHRPIERIGDSTTTSLNFIQRLNVAIDIASAVDYFHN NCGTPIVHCDLKPSNVLLDEDMVAHVGDFGLARFLLMVENPSSSTIGIKGTIGYAPPVSIQGDIYSYGILLLELFTGKRPTDESFRDGLSLHNVVMSALS EQHTFEVVDPILHNELLHRLTTHHNNTSSSSDEARKDLEEVMSSILKIGVSCSLNIPEERISMGEVLSRLTAVKKKVCPVDRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10006445 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029186 [exp]	1.4	0.8398
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10032019 [exp]	3.7	0.8339
AT3G47570			Leucine-rich repeat protein ki...		Lus10030846 [exp]	4.9	0.8090
AT2G37330		ALS3	aluminum sensitive 3 (.1)		Lus10025278 [exp]	5.2	0.7603
					Lus10005309 [exp]	12.4	0.8106
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10024005 [exp]	18.8	0.7930
AT5G02070			Protein kinase family protein ...		Lus10014387 [exp]	19.3	0.8240
AT4G32870			Polyketide cyclase/dehydrase a...		Lus10000573 [exp]	24.0	0.8186
AT4G19500			nucleoside-triphosphatases;tra...		Lus10006907 [exp]	28.8	0.7622
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10037039 [exp]	30.2	0.7790

Compare expression of checked genes

Lus10006445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.