Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47160 233 / 4e-77 RING/U-box superfamily protein (.1.2) AT5G01520 229 / 8e-76 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) AT5G58787 227 / 1e-74 RING/U-box superfamily protein (.1.2) AT1G13195 227 / 1e-74 RING/U-box superfamily protein (.1.2) AT1G24440 220 / 6e-72 RING/U-box superfamily protein (.1) AT5G47610 48 / 9e-07 RING/U-box superfamily protein (.1) AT5G01960 49 / 2e-06 RING/U-box superfamily protein (.1) AT3G20395 47 / 3e-06 RING/U-box superfamily protein (.1) AT5G05130 46 / 1e-05 DNA/RNA helicase protein (.1) AT2G27940 45 / 1e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011390 [exp] 496 / 0 AT3G47160 233 / 3e-77 RING/U-box superfamily protein (.1.2) Lus10037053 [exp] 404 / 2e-144 AT3G47160 234 / 1e-77 RING/U-box superfamily protein (.1.2) Lus10036934 [exp] 393 / 5e-140 AT3G47160 239 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10004821 [exp] 240 / 7e-80 AT5G01520 387 / 5e-138 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10002491 [exp] 236 / 2e-78 AT5G01520 386 / 1e-137 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10006253 [exp] 233 / 8e-77 AT1G13195 336 / 4e-117 RING/U-box superfamily protein (.1.2) Lus10036937 [exp] 233 / 9e-77 AT1G24440 332 / 5e-116 RING/U-box superfamily protein (.1) Lus10006448 [exp] 229 / 1e-75 AT1G24440 318 / 1e-110 RING/U-box superfamily protein (.1) Lus10005859 [exp] 224 / 8e-74 AT3G47160 372 / 5e-132 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G053000 [exp] 369 / 2e-130 AT1G13195 235 / 1e-77 RING/U-box superfamily protein (.1.2) Potri.004G041200 [exp] 254 / 1e-85 AT3G47160 313 / 1e-108 RING/U-box superfamily protein (.1.2) Potri.012G093300 [exp] 252 / 2e-84 AT1G24440 312 / 4e-108 RING/U-box superfamily protein (.1) Potri.011G050700 [exp] 250 / 6e-84 AT3G47160 311 / 5e-108 RING/U-box superfamily protein (.1.2) Potri.009G045400 [exp] 242 / 1e-80 AT3G47160 381 / 1e-135 RING/U-box superfamily protein (.1.2) Potri.015G089800 [exp] 240 / 6e-80 AT1G24440 295 / 3e-101 RING/U-box superfamily protein (.1) Potri.016G115300 [exp] 239 / 2e-79 AT5G01520 339 / 6e-119 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.008G181300 [exp] 239 / 2e-79 AT1G24440 352 / 1e-123 RING/U-box superfamily protein (.1) Potri.010G052700 [exp] 236 / 2e-78 AT1G24440 349 / 1e-122 RING/U-box superfamily protein (.1) Potri.006G099600 [exp] 233 / 3e-77 AT5G01520 324 / 4e-113 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10006447 pacid=23171995 polypeptide=Lus10006447 locus=Lus10006447.g ID=Lus10006447.BGIv1.0 annot-version=v1.0 ATGTGGGAGAAAGAGCCTCTTCGATCATCTTCCTTCAGAGAATCCCTCAAAGCCCTCGAAGCTGATATTCAGCATGCCAATACTCTGGCAGCTTCTCTCC CAGGAGATTATGGCGAAGATTGTGTACAGATGAGACTTTCCTATAGTCCGATCGCTCCTTACCTACTCTTCTTGGTTGAATGGATGGACTATAGCTGTAC TGATGCTCTTCCTAGCTACTTAGGCCTTCTCCATGTGCTTGTTTACAAGGTTTACATTGATGGAGTCCCGACGTTGTCGTCCAAGGAGAGGAAGGCTAGT CTTAGGGAGTTCTATGCAATTATATACCCTTCACTCAGGCAGCTCGAGGGCCAGTTCGAAGGATCTGAAAAAAAGGACGACCATAAACGAACTCGGAGAA AGCTTATTACTGATAACGAATTTGATAGAGACGACGAATGTGGGATATGCATGGAGGGTAGTGGCCAAATGGTGTTGCCTAACTGTGGACACTCCTTCTG CATGAACTGCTTCCACGATTGGAATTCGAGATCAAAGTCCTGCCCATTCTGTCGTGGCAGCTTGAAGAGAGTGAGGTCAAGGGACTTGTGGGTTCTACTC AACAATGGCGATGTAGTCGATGCAGCCACTCTAGCGAAAGAAAATCTTAGTCGATTCTACCTCTATGTCGAGAATCTTCCCCTCGTAATGCCCGACACTC ACGCCATTCTGTTCGATTATATGATATGA
AA sequence Show only first row Show all	>Lus10006447 pacid=23171995 polypeptide=Lus10006447 locus=Lus10006447.g ID=Lus10006447.BGIv1.0 annot-version=v1.0 MWEKEPLRSSSFRESLKALEADIQHANTLAASLPGDYGEDCVQMRLSYSPIAPYLLFLVEWMDYSCTDALPSYLGLLHVLVYKVYIDGVPTLSSKERKAS LREFYAIIYPSLRQLEGQFEGSEKKDDHKRTRRKLITDNEFDRDDECGICMEGSGQMVLPNCGHSFCMNCFHDWNSRSKSCPFCRGSLKRVRSRDLWVLL NNGDVVDAATLAKENLSRFYLYVENLPLVMPDTHAILFDYMI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47160			RING/U-box superfamily protein...		Lus10006447 [exp]	0	1
AT3G47160			RING/U-box superfamily protein...		Lus10011390 [exp]	1.0	0.9536
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10025789 [exp]	1.7	0.8950
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10041366 [exp]	2.0	0.9122
					Lus10013206 [exp]	2.2	0.8818
AT3G14280			unknown protein		Lus10037453 [exp]	3.5	0.8827
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10010633 [exp]	5.3	0.8777
AT3G15890			Protein kinase superfamily pro...		Lus10011490 [exp]	7.3	0.8790
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10013027 [exp]	7.9	0.8768
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10021202 [exp]	8.9	0.8609
AT4G21865			unknown protein		Lus10014471 [exp]	9.8	0.8774

Compare expression of checked genes

Lus10006447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.