Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24440 313 / 1e-108 RING/U-box superfamily protein (.1) AT1G13195 296 / 8e-102 RING/U-box superfamily protein (.1.2) AT5G01520 205 / 4e-66 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) AT5G58787 204 / 8e-66 RING/U-box superfamily protein (.1.2) AT3G47160 201 / 2e-64 RING/U-box superfamily protein (.1.2) AT1G23980 44 / 4e-05 RING/U-box superfamily protein (.1) AT5G22750 44 / 5e-05 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT5G05130 44 / 7e-05 DNA/RNA helicase protein (.1) AT5G43530 44 / 7e-05 Helicase protein with RING/U-box domain (.1) AT2G20030 42 / 0.0002 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011391 [exp] 458 / 4e-166 AT1G24440 319 / 4e-111 RING/U-box superfamily protein (.1) Lus10006253 [exp] 368 / 4e-130 AT1G13195 336 / 4e-117 RING/U-box superfamily protein (.1.2) Lus10036937 [exp] 363 / 4e-128 AT1G24440 332 / 5e-116 RING/U-box superfamily protein (.1) Lus10006447 [exp] 229 / 1e-75 AT3G47160 233 / 5e-77 RING/U-box superfamily protein (.1.2) Lus10011390 [exp] 227 / 1e-74 AT3G47160 233 / 3e-77 RING/U-box superfamily protein (.1.2) Lus10036934 [exp] 215 / 6e-70 AT3G47160 239 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10037053 [exp] 211 / 3e-68 AT3G47160 234 / 1e-77 RING/U-box superfamily protein (.1.2) Lus10005859 [exp] 206 / 1e-66 AT3G47160 372 / 5e-132 RING/U-box superfamily protein (.1.2) Lus10004821 [exp] 202 / 4e-65 AT5G01520 387 / 5e-138 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052700 [exp] 351 / 1e-123 AT1G24440 349 / 1e-122 RING/U-box superfamily protein (.1) Potri.008G181300 [exp] 347 / 4e-122 AT1G24440 352 / 1e-123 RING/U-box superfamily protein (.1) Potri.012G093300 [exp] 325 / 2e-113 AT1G24440 312 / 4e-108 RING/U-box superfamily protein (.1) Potri.015G089800 [exp] 301 / 6e-104 AT1G24440 295 / 3e-101 RING/U-box superfamily protein (.1) Potri.010G053000 [exp] 217 / 9e-71 AT1G13195 235 / 1e-77 RING/U-box superfamily protein (.1.2) Potri.016G115300 [exp] 215 / 3e-70 AT5G01520 339 / 6e-119 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.009G045400 [exp] 211 / 9e-69 AT3G47160 381 / 1e-135 RING/U-box superfamily protein (.1.2) Potri.004G041200 [exp] 211 / 2e-68 AT3G47160 313 / 1e-108 RING/U-box superfamily protein (.1.2) Potri.011G050700 [exp] 207 / 8e-67 AT3G47160 311 / 5e-108 RING/U-box superfamily protein (.1.2) Potri.001G250800 [exp] 206 / 1e-66 AT3G47160 344 / 4e-121 RING/U-box superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006448 pacid=23171965 polypeptide=Lus10006448 locus=Lus10006448.g ID=Lus10006448.BGIv1.0 annot-version=v1.0 ATGATGTATTTGCAGCTGGAAAGGTCCTCTTCTTACCAGGACTCCCTCAAAGCTCTGGAAGCTGATATCCACCATGCCAACACCTTGGCAGCTGAAATCC CTAGGGAGAAAGGTGGATTACATCTCCAGATGAAGCTAATGTACAATCAATGGGCTCCAATTTTCCTCTACTTGCTTCAGAGGATTGATTGCTCCTCTTG CATCTGTCTGGTTCCAAGATACCTTAATCTCTTCCACATCCTCGTATACAAGGTTCGAGCAGATGGAAGGCCGGGAATATCTTCTTACGGAAGGAAAGCA ACCGTTAAGGAGTTCTACGGTGTTATTCTACCTTCTCTACAAAGGCTTCATAGCAGCTTGGAGGAACCGGAACCGGAACCAGAATCGAAACTGAATGATG TTCGTTCAATCAGAGATCGTTATGAAGATGAATGTGGGATTTGCTTGGAGCCTTGCACCAAAATGGTTCTTCCCAGTTGCTACCATGCAATGTGCATCAA ATGCTACCACAACTGGAACACGAGGTCAGAGTCATGTCCATTCTGCCGGGGAAGCTTGAAGAGGGTCAACTCGGAGGACCTATGGGTGCTTACTTGTGAA AAAGACGTGGTCGATACCAAACTGATCACTCGAGAAGACTTGGTGCGGTTCTACCTCTACATCAACAGCCTGCCTAAAGAATACCCGGATGCGATGTTCT TGGTATACTACGAGTACCTATTCTGA
AA sequence Show only first row Show all	>Lus10006448 pacid=23171965 polypeptide=Lus10006448 locus=Lus10006448.g ID=Lus10006448.BGIv1.0 annot-version=v1.0 MMYLQLERSSSYQDSLKALEADIHHANTLAAEIPREKGGLHLQMKLMYNQWAPIFLYLLQRIDCSSCICLVPRYLNLFHILVYKVRADGRPGISSYGRKA TVKEFYGVILPSLQRLHSSLEEPEPEPESKLNDVRSIRDRYEDECGICLEPCTKMVLPSCYHAMCIKCYHNWNTRSESCPFCRGSLKRVNSEDLWVLTCE KDVVDTKLITREDLVRFYLYINSLPKEYPDAMFLVYYEYLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24440			RING/U-box superfamily protein...		Lus10006448 [exp]	0	1
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10022407 [exp]	5.0	0.7917
AT2G16710			Iron-sulphur cluster biosynthe...		Lus10017048 [exp]	8.9	0.7362
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10017662 [exp]	13.0	0.6927
AT2G28085			SAUR-like auxin-responsive pro...		Lus10001397 [exp]	18.7	0.7866
AT4G27380			unknown protein		Lus10038579 [exp]	20.1	0.7198
AT1G19980			cytomatrix protein-related (.1...		Lus10034526 [exp]	56.9	0.6355
AT5G10695			unknown protein		Lus10042440 [exp]	72.5	0.6821
AT3G58060			Cation efflux family protein (...		Lus10029300 [exp]	74.0	0.6613
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10018785 [exp]	75.0	0.6713
AT1G03890			RmlC-like cupins superfamily p...		Lus10033893 [exp]	79.9	0.6631

Compare expression of checked genes

Lus10006448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.