Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26400 69 / 1e-13 RING/U-box superfamily protein (.1.2) AT5G56340 68 / 5e-13 ATCRT1 RING/U-box superfamily protein (.1) AT5G08139 67 / 9e-13 RING/U-box superfamily protein (.1) AT1G55530 66 / 2e-12 RING/U-box superfamily protein (.1) AT5G59550 66 / 3e-12 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G60820 65 / 4e-12 RING/U-box superfamily protein (.1) AT1G26800 63 / 5e-12 RING/U-box superfamily protein (.1) AT3G13228 64 / 9e-12 RING/U-box superfamily protein (.1) AT3G13430 64 / 1e-11 RING/U-box superfamily protein (.1.2.3) AT3G46620 63 / 2e-11 zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011392 [exp] 156 / 8e-47 AT5G59550 75 / 2e-15 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10005237 [exp] 82 / 9e-19 AT1G14200 72 / 1e-15 RING/U-box superfamily protein (.1) Lus10012819 [exp] 74 / 1e-15 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1) Lus10013397 [exp] 75 / 2e-15 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10002637 [exp] 74 / 5e-15 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10036757 [exp] 71 / 1e-14 AT1G26800 127 / 1e-36 RING/U-box superfamily protein (.1) Lus10020258 [exp] 72 / 3e-14 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10037170 [exp] 68 / 1e-13 AT1G26800 128 / 5e-37 RING/U-box superfamily protein (.1) Lus10030464 [exp] 67 / 4e-13 AT1G26800 181 / 3e-57 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168300 [exp] 74 / 8e-16 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.008G087200 [exp] 72 / 5e-15 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1) Potri.003G223200 [exp] 71 / 6e-14 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.001G001500 [exp] 69 / 2e-13 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1) Potri.013G060500 [exp] 68 / 3e-13 AT1G55530 207 / 2e-64 RING/U-box superfamily protein (.1) Potri.001G103900 [exp] 67 / 4e-13 AT4G26400 85 / 2e-19 RING/U-box superfamily protein (.1.2) Potri.019G032500 [exp] 67 / 9e-13 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 65 / 4e-12 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.006G219000 [exp] 65 / 5e-12 AT5G08139 75 / 7e-15 RING/U-box superfamily protein (.1) Potri.007G118000 [exp] 63 / 9e-12 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10006449 pacid=23171972 polypeptide=Lus10006449 locus=Lus10006449.g ID=Lus10006449.BGIv1.0 annot-version=v1.0 ATGGAGCACTATCAATCAGACGGCGACCACCCATCAAATAATCCCGTTCTTCCACCTCCGGCGAAAATCAACGGCGATCCGTCGACGACGACGAAGACGC CACACCTCCACGCAACCTTTGTGTTCAAGTGCTTGCGACGAGACTTCGTCCAGTCTCAGGATGGCAACCTCACACTCGTCGACGAGCAGGAAATCGAATC CCCAGATGGTCCGAAGACTCTCTGCTTGGGCCCAGTGGGACTGTTCCACGACCACCGGCAGAAGGTCGCCGACCGGGTCGCCCGGTTCCTGAACCGACTC GGCTGGTCCGACTGGGTCGGTTATGTATCCAATGCCCTGACCCGGGAGGTCGGGAAATTGACCCGGCAGCCGGTTTGCAAACCAATTCAGTTTGATTTCA CTCTGACTATGCTCCACGGCGCCGTTTGGGACGAGGTGGACTACATGGAGATGGTGTCGGAAGCAGAGGCGGAGCAGAGTAACTACGGGATGGTGCCGAC GGCAGAGAAAGCGATCGAGGAGATGCTAGCGACGTTCGAGATCGGAGAGGGGCAGCCGGCGGTGGTTTGCATGATCTGCTTGGAAGATTTGGCGGCGGCG GCGGCGGAGATGCCTTGCAGGCATCGGTTTCACAAGGGGTGTATAGTGAGTTGGTTGAAGCAGAGCCATTACTGTCCGATTTGTCGATTCGAGATGCCGA AGGAGGTGGAGATTTCCAATTTTTCGATTTGA
AA sequence Show only first row Show all	>Lus10006449 pacid=23171972 polypeptide=Lus10006449 locus=Lus10006449.g ID=Lus10006449.BGIv1.0 annot-version=v1.0 MEHYQSDGDHPSNNPVLPPPAKINGDPSTTTKTPHLHATFVFKCLRRDFVQSQDGNLTLVDEQEIESPDGPKTLCLGPVGLFHDHRQKVADRVARFLNRL GWSDWVGYVSNALTREVGKLTRQPVCKPIQFDFTLTMLHGAVWDEVDYMEMVSEAEAEQSNYGMVPTAEKAIEEMLATFEIGEGQPAVVCMICLEDLAAA AAEMPCRHRFHKGCIVSWLKQSHYCPICRFEMPKEVEISNFSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26400			RING/U-box superfamily protein...		Lus10006449 [exp]	0	1
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10028717 [exp]	1.0	1.0000
AT3G19620			Glycosyl hydrolase family prot...		Lus10002127 [exp]	2.0	0.9673
					Lus10021851 [exp]	7.7	0.9408
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	8.7	0.9408
					Lus10008791 [exp]	9.7	0.9408
					Lus10012440 [exp]	11.0	0.9408
					Lus10026713 [exp]	11.5	0.9404
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030546 [exp]	12.3	0.9332
AT1G69990			Leucine-rich repeat protein ki...		Lus10041486 [exp]	12.5	0.9227
AT1G04380			2-oxoglutarate (2OG) and Fe(II...		Lus10009240 [exp]	12.7	0.8728

Compare expression of checked genes

Lus10006449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.