Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24460 882 / 0 TNO1 TGN-localized SYP41 interacting protein, unknown protein AT4G31570 79 / 3e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006252 [exp] 1883 / 0 AT1G24460 937 / 0.0 TGN-localized SYP41 interacting protein, unknown protein Lus10036938 [exp] 1754 / 0 AT1G24460 838 / 0.0 TGN-localized SYP41 interacting protein, unknown protein Lus10011393 [exp] 1386 / 0 AT1G24460 375 / 7e-112 TGN-localized SYP41 interacting protein, unknown protein Lus10011394 [exp] 1376 / 0 AT1G24460 415 / 3e-126 TGN-localized SYP41 interacting protein, unknown protein Lus10026934 [exp] 82 / 4e-15 AT4G31570 680 / 0.0 unknown protein Lus10020133 [exp] 78 / 8e-14 AT4G31570 1315 / 0.0 unknown protein Lus10009250 [exp] 0 / 1 AT1G24460 80 / 1e-21 TGN-localized SYP41 interacting protein, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052600 [exp] 1428 / 0 AT1G24460 1116 / 0.0 TGN-localized SYP41 interacting protein, unknown protein Potri.018G008600 [exp] 103 / 9e-22 AT4G31570 1464 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006450 pacid=23172005 polypeptide=Lus10006450 locus=Lus10006450.g ID=Lus10006450.BGIv1.0 annot-version=v1.0 ATGTCCGGCGGCAGTAGCGACGGCGACGGCGGCGGAGAGGACATGCAATTGATTAACGGCGATGGGGAATCGAATGGAGGAGCTGAAATGAGTGAAACTC AAGCAAACTATCAGCTGCTGAGTGAGACTGTGAGAGCGGATTATATTCCTCCTTGTTGGGCTAATTTTCTATGTTTCTCGATTTGCTTTCGTTCTCTTGG GAAGTTTCCGAGTGAGAGTGAAATGCAGGAAGGAGGAGGAGATTCGGCTTTGATTCCTCACGTGGAGAGTAAGGAAGACATGTTTGTGGATGCAAACGAG GATATTATTCAAGACGGCCAATTTCACGAGGCTGATAGCGAAGGTGACTCGAAGGACGAAGAAGAAGTTTCATCGTCGGTGGATGTTGATGGTCTAGGAG AAAGGCTCGAGAAGGCTATTTTGGAGAAAAAGAGTATCGAGAAAGAGTTAAAGGAAGAAAAGGAAAGCTTTGCCAGAGAAGTTGAAGAATTCCGAGAAAG GCTCGAGAAAGCGGTTTTTGAGAAAGAGAGTGTCGAGAAGGAGTTAAAGGAGGAAAGGGAGAGCTTTGCTAAGGAGGTTGGCGGTCTGTGGAAGCAGCTG AAAGATCTGACTAATGGATGGTTAGATGATGTGGAAGAGGGAGAGGTGCGGACCGATGAGTCATTGCCAGAACTGATAAATGAATGTTCACAGTTTGTTA AAGCTGCTTTAGAGCAGAGGCAACAGGCTGAGAGGATATTGAGTGAAATTCATCAACAGATCGAAGATCTGAATGCGAAAGTTCAAGGGAATCAGAATGT TGAAGTTTCTGTCGACAGAATGATGTATTCGCTTAGTACGGTGGTGAATCCAGGGGAGTTGGTAGATTATTCTGTTCTTGGGAAAACGGATTATGTCGAA AGATGTGCTTCTTTGTTGGTAGAGCAATATAGGTGGATTCTTCACGAGATTGATCAATTCAGGCATTCCGTAACAGAAGGAGGTTCAAATGTGGAAGCGC AAGGGGACTACACTTGGGGATCGATTTTTGCGACGGCCAAAGCTGAGTTCTTGGAGCTCAAGAGAAAAGAAATGGAAATGGCGGAAAAGCTAGCCAATAT GGAGGATCGGAATAGACAATTGGTTGATGAAGTTGAGAAGGAAAAGACAGAGATCGAAAAGTTGAAGGCAGACCTTCAGCTCGAAAAGAACAGGTGTGCT AATGCCAAAGAGAAACTCAATATGGCCGTCACTAAGGGCAAGACGCTGATTCAAGTCCGTGATTCCCTGAAGCAGTCTCTAGCTGAGAAGGGCACTGAGC TCGAAAAGTGTTTGTCAGAATTGCAAGAGAAATCGCATGCAGTTGAAGCGGCTGAGCATTGTAAGGACGAATTAGTCAAATATGAAAATGCAGTCGCTGC ATTGCAGGACTTGCTCTCTTGGAGGAACGCAATGGTCGAGAGCTTCGAAGATCTACAGCCTACGGATCTGGAAGGAAAATTGAGGAGGATTGTAAATCTG GTGGGTTCTTTGCAGGAAAGTCTATTGCAAAAGGCATCTGTTGTTGATAACATCGAAGAAATTCTTTCTCAGACCACTGTCCCGGAGGAACTAAAATCGG AAGATGTTACTGTGAGGATGAAGTGGATTTTAGATTTGGTTGTATCAATCAATGAAACACTTTCACAGAAGAACACCATTCTTGAGGAATTTGAAGAAAC ACTGACTCAAATAAGTATACCCGATGATGTTCAATCAGAGGATTCAATTGGGAGGTTGAAATGGCTAGTTGAAGACAGGCATAAAATTACAGACGATTTG CTTGAATTCCAGAAAGCGAAAGATGCGTTAAGCCTTGTCGATATGCCAGAATCCGTCTCATCTTCCGATTTGGCAACTCAATTAGGTTGGCTTAAAGGAT CGATTGACGAGATGAAGGGTGCAATAACGGCAGAAATTGAAGAGAAGGAATGTTTAAAGATGGAACTTGACGAACTATTGGGGAAGCATGAACAGATGGT TGAAAAAGAACGTGAAGCTTCCGCTAATATTTCTCATGACAATGCTGAGGTCTTTTGTCGAATGCAAAGTCTCTTGTACGTCAGGGATCAAGAGTTGACG CTCTGTAAGACGATTCTAGAAGAGGACGAGCTTGTGCGGTTGCAATTGCGTAATCTATCGGAATCCCTGCATTCAGCAAGTAAGGAGCTTGAAGCATTGC GGGAGGAAAAAGAATCTAGGGAAAGTGATCTTAACAGATCGGAGGGAAAAGCCGCCTTGTTCAGGGAGAAGTTGACCTTGGCAGTTAAGAAGGGCAAAGG ATTGGTGCAAGATAGAGAAAACCTGAAGCATCTTTTGGATGAAAAGAAGTCGGAAATCGAGAAATTGAATCTTGAGATAGACCGGTTATCGACGGATTTG GAGCAAGTACAGAAGTTGGAGGCTGATCTTGTTGCCGTGAAAGATCAACGAGATCAATTCGAGCAGTTATTACTTGAGAGCGATAGTACGCTGCAGAAAC TAATGGAGTGTGTTGACTGCATTACTCTTCCCATCGACTCAACTTCCGAAAAGCCTGTGGGTAAGATGAAGGCTCTTGCTGACTATTTACGTGAGTCCCA GCGGCAGAAGGTTCTTGTCAAGCAAGAATTAGATACAGTGAAGGAAGAATACAGCATGTTGGCTAGTAAATTGGCAGAAGCGCAGGAAAATCTGAAATCT GTAGAAGATGCATTGTTGTCTGCAAAGAACCACATTTCGGAGCTAGCTGAAGAAAAGAGGGTACTAGAGGATTCAAAGAAGAATGTGGAACTAGACTTGC AAAATGCATTAGACGAAGTTAAGGCTCGAACAAGCGAGTTTACTGAGGCTCATGCAGCTCGAAGGTCACTTGAAGATGGATTGTCGTTGGCGGAAAATAA CATTGCTGTGCTCGTTAAAGAAAGAGAAGAGGCTCTAATTAGCAGGGTTACCGTTGAGGCCGAGTTAGAGAAGGTGAGAGATCAATGGGATAGTCAATCT GGAAAATTGACCGATGCGTATAAATGTATCGAGTCTCTGGAAGACAATCTCGCTCAGGCGGAAGCCAAAGTGGCTTTGCTGACTGAAGGAAACAACAATT TCCTGGCTGGCAGAACCCATTTGGAGAATGAGTTGAAGAAACTGAAAGATGAAGCTGAGTTACAGGTAGGCAAGCTGGAAGATAACTCTTCGACTGTTAA ATCGTTGGAAGATGCTTTGTCGAAGGCTATGAGTGACATATCCGCACTGGAAGATGATAAGAGGATTTCTGAACAGGAAATATCAACGTTGAATTCCAAG TTGAATGCTTGCATGGACGAGTTAGCTGGAGCCAGTGGCAGCTTGGCTAGCAAATCCGTGGAGTTAATTGGTCATCTTACAAATCTTCATATGCTTACGA AGAACGATGGGCTGTTGCCTGTAATCAGACAATATTTCGAGAAGCAATTTCGAGATTTCAGTGATATGGATGCCATACTCAGAGACATGAAGGACGCTTT TGCTAATGGAGATTCAACGTTGCAGGATGATTCACAGGCAAGGAAAACTTTACCGTATGACACTGATGGCTTTCTAAGTGGAAAATTGGAAAATGGAGAC TTGAACTCAACTGATTTGGATAACGTGTCGTTGTACTTCAAGAAGTTTAGCGATGGCTTACAGATGAGAGACAAAATCCTGGTTGAGAATTTCAATAGAT TCTCGAGCTTCATGGAGGAGTTTGTTGAAGCTATGCTGTGGAGATTAAGGACGACGAAGGATGCTGTAATTGTTACTTTCGAGCAAATGGAGTCCATGAA ACAGAAGATGACGGACTTTGAAATCCATAAAGAAGAACAAGATAGAGCGTTAGCCTTGCTTGACAAAGAGCATAAAGCTTTGCTCTCTGCTTGTATTAAT GCCACAAGAGAACTGCAGCAGTTTGAATGTGTAAACGGTCTCGAGCTTGAAAAGCTTGACCATTTGATTCCATCAGTTAAGGAAAGGACCGGCGTCGAGG ACAGTGAAAACGTCAAGATAGCCGAAAAGTTGGCATTGGCTACAAGAAAGGTGAAAAACTATATCAAATCGTTCGAAAGTACGAGCGAAGTGGCAGCTAC CGTGATTGCAGATTTAGAGAAAAGATTGACCGTCAGTGTGGGGAATTCTGAGAGCATCCACAGAGAAAGAGATTCGTTACAAAGTAGGGTTGTGGAGTTG GAGACTGATGTAGATGCACTGCAAATTTCGTGCCAGAAGCTGAGGGATGAACTAGGAGAGCGAGAAAGCATCCTGAAAGAAAGGGACCTACTTCAGAGTA GAGCTGTAGAATTGGAGGGTGATTTAGAAGCATCCCGAAATGAAAGGGATGTACTTAAAACCAGGGTTGCGGAGTTGGAAGACGAGATAGAAGCATCGCG AAATTCATTCCAGCAGCTGAGCTTGAAACTAGTAGACTTTGAAAGCGTCCAACAAGAAAGGGATCTATTCCAGAGTAGGGTTGCAGAGTTGGAGGCTAAG CTAGAGGATTATGATAACTTGGAGAAGAAGTTACTGATGAAAGAACAAGAAGCTACAGATCCTCTTATGTCAACTTCAGAGTTGAAAACTCTTTTCGAAA AAATAAGTAGGGTTGACGTTTTTAATTTAGATGCAGAAGTAGGAACAGCTGGATCACAATGTTCTGTTGATGTAGATAAACTATTTTACATAGTTGATAG CTTGCCACAGTTACAGAATCAAATAAATGTATTAGCTTCAGAGAAAGATCAGCTGCAGTCAACTGTATCAAGACAGATTCTCGAAATCAAACTTCTGAAG GATGATGTTCAAACACATTCCAGAAACCAACAAGATTCGGAGACGATGAAGGGTGAAATCTCTGAGATAACAGTTGGCTTGGAGAAAATAATCAATCTTT TGGGAGGTAATGAAGTTGTTGGAGATCAAAAGCCAACTAGTGCCGGGATGCTTCTGCCCCAATTGGAAAAGGAGGTCAAGGCATTGTTCTCGGAAGCTGG AAATTCGAAATCTCAGGCGCAGGAGCTTGGTAACAGGCTGTACGAGAGCCAAAAGGCTGTGGACGAATTGTCAACTAGGGTCAGAATGTTCGAAGATTCA CTTCAAAGTAGAAGTCCACAACCCGAGATGTTCCAGGAAAGAAACATGTTTGAACCGCCATCTCGTCCAAGTGGCTCAGAGATATCTGAAGTCGACGATG CTGGTTCGGTGGTGAAGACTTCTCTGCCTCCTGCTGCTGCTCATGTGAGAACTACAAGAAAAGGATCCACGGAGCATCTAGCAATTAGCATCGACTCAGA ATCTTCCACCCTTATCAACAGAGACGAAACAGATGAGGACAAAGGTCGCTCATTTAGGTCTCTCAACGCATCAGGCCTCATCCCAACACAAGGGAAGTCT CTTGCGGATCGAGTAGATGGATTATGGGTATCAGGCGGTAGGGTTTTGATGAGCCGTCCAAGAGCAAGACTTGGCCTGATAGGCTATTGGCTTCTCTTAC ACATATGGTTATTGGCCACCATTTTATAG
AA sequence Show only first row Show all	>Lus10006450 pacid=23172005 polypeptide=Lus10006450 locus=Lus10006450.g ID=Lus10006450.BGIv1.0 annot-version=v1.0 MSGGSSDGDGGGEDMQLINGDGESNGGAEMSETQANYQLLSETVRADYIPPCWANFLCFSICFRSLGKFPSESEMQEGGGDSALIPHVESKEDMFVDANE DIIQDGQFHEADSEGDSKDEEEVSSSVDVDGLGERLEKAILEKKSIEKELKEEKESFAREVEEFRERLEKAVFEKESVEKELKEERESFAKEVGGLWKQL KDLTNGWLDDVEEGEVRTDESLPELINECSQFVKAALEQRQQAERILSEIHQQIEDLNAKVQGNQNVEVSVDRMMYSLSTVVNPGELVDYSVLGKTDYVE RCASLLVEQYRWILHEIDQFRHSVTEGGSNVEAQGDYTWGSIFATAKAEFLELKRKEMEMAEKLANMEDRNRQLVDEVEKEKTEIEKLKADLQLEKNRCA NAKEKLNMAVTKGKTLIQVRDSLKQSLAEKGTELEKCLSELQEKSHAVEAAEHCKDELVKYENAVAALQDLLSWRNAMVESFEDLQPTDLEGKLRRIVNL VGSLQESLLQKASVVDNIEEILSQTTVPEELKSEDVTVRMKWILDLVVSINETLSQKNTILEEFEETLTQISIPDDVQSEDSIGRLKWLVEDRHKITDDL LEFQKAKDALSLVDMPESVSSSDLATQLGWLKGSIDEMKGAITAEIEEKECLKMELDELLGKHEQMVEKEREASANISHDNAEVFCRMQSLLYVRDQELT LCKTILEEDELVRLQLRNLSESLHSASKELEALREEKESRESDLNRSEGKAALFREKLTLAVKKGKGLVQDRENLKHLLDEKKSEIEKLNLEIDRLSTDL EQVQKLEADLVAVKDQRDQFEQLLLESDSTLQKLMECVDCITLPIDSTSEKPVGKMKALADYLRESQRQKVLVKQELDTVKEEYSMLASKLAEAQENLKS VEDALLSAKNHISELAEEKRVLEDSKKNVELDLQNALDEVKARTSEFTEAHAARRSLEDGLSLAENNIAVLVKEREEALISRVTVEAELEKVRDQWDSQS GKLTDAYKCIESLEDNLAQAEAKVALLTEGNNNFLAGRTHLENELKKLKDEAELQVGKLEDNSSTVKSLEDALSKAMSDISALEDDKRISEQEISTLNSK LNACMDELAGASGSLASKSVELIGHLTNLHMLTKNDGLLPVIRQYFEKQFRDFSDMDAILRDMKDAFANGDSTLQDDSQARKTLPYDTDGFLSGKLENGD LNSTDLDNVSLYFKKFSDGLQMRDKILVENFNRFSSFMEEFVEAMLWRLRTTKDAVIVTFEQMESMKQKMTDFEIHKEEQDRALALLDKEHKALLSACIN ATRELQQFECVNGLELEKLDHLIPSVKERTGVEDSENVKIAEKLALATRKVKNYIKSFESTSEVAATVIADLEKRLTVSVGNSESIHRERDSLQSRVVEL ETDVDALQISCQKLRDELGERESILKERDLLQSRAVELEGDLEASRNERDVLKTRVAELEDEIEASRNSFQQLSLKLVDFESVQQERDLFQSRVAELEAK LEDYDNLEKKLLMKEQEATDPLMSTSELKTLFEKISRVDVFNLDAEVGTAGSQCSVDVDKLFYIVDSLPQLQNQINVLASEKDQLQSTVSRQILEIKLLK DDVQTHSRNQQDSETMKGEISEITVGLEKIINLLGGNEVVGDQKPTSAGMLLPQLEKEVKALFSEAGNSKSQAQELGNRLYESQKAVDELSTRVRMFEDS LQSRSPQPEMFQERNMFEPPSRPSGSEISEVDDAGSVVKTSLPPAAAHVRTTRKGSTEHLAISIDSESSTLINRDETDEDKGRSFRSLNASGLIPTQGKS LADRVDGLWVSGGRVLMSRPRARLGLIGYWLLLHIWLLATIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10006450 [exp]	0	1
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10002604 [exp]	3.0	0.7531
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10013293 [exp]	7.0	0.7583
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030817 [exp]	9.5	0.7541
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10011394 [exp]	10.7	0.6643
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10010955 [exp]	14.0	0.7071
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Lus10004802 [exp]	14.1	0.6979
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10008002 [exp]	14.5	0.6876
AT1G06470			Nucleotide/sugar transporter f...		Lus10031370 [exp]	16.5	0.7359
AT5G65290			LMBR1-like membrane protein (....		Lus10035927 [exp]	17.9	0.6731
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Lus10041607 [exp]	21.3	0.7182

Compare expression of checked genes

Lus10006450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.