Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26090 587 / 0 ATRGS1, RGS1 REGULATOR OF G-PROTEIN SIGNALING 1, G-protein coupled receptors;GTPase activators (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011395 [exp] 875 / 0 AT3G26090 624 / 0.0 REGULATOR OF G-PROTEIN SIGNALING 1, G-protein coupled receptors;GTPase activators (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G181500 [exp] 634 / 0 AT3G26090 578 / 0.0 REGULATOR OF G-PROTEIN SIGNALING 1, G-protein coupled receptors;GTPase activators (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0272 [flax] [poplar] RGS PF00615 [flax] [poplar] RGS Regulator of G protein signaling domain
Representative CDS sequence Show only first row Show all	>Lus10006452 pacid=23172012 polypeptide=Lus10006452 locus=Lus10006452.g ID=Lus10006452.BGIv1.0 annot-version=v1.0 ATGGCGAGCTCGAAAAGCTGTGCGATACTAGGAGGATGCCCCACTGATTACATTGCTATCGCCATTGCCATCCTCTCCCTGATGCTGCTTGTTTCGAAAT CTGTTGTTCCCTGCTTGTTACACAGTGTTCCAAGAACCAACGGCAGTGGTTTCTGGTTTCCTGTGATTCAACTCTTAGGCAGCTTCAACCTCTTGTTATC ACTTGTGATGTCAGTTAACTTCTTGAAGCTAGAAAAGAATTACTGGTGGTCTTCCTGCTATCTATGGGGAGTCTGGTTCGAAGGTCCTCTAGGATTCGGT TTGATACTGAGCTGTCGTATTGCACAGGCGTTTCAACTCTACTTCATATTTGTCAAGCGGAGATTATCGCCGTTGAAATCTTATGTTTTCCTTCCACTGG TTCTGCTGCCATGGATTGCTGGAGCTGCATATATTCATGCGAAGAAGGCAATGAACCATCGTTGCCACATGGGAACCCGGTGGATTGTCCCGGTTGCGTG CCTTCATACGCTCTATGTTGTTGGCTTGCTTGGATGTACCAGAGCAATAGGGCATATAGAGTTCAAGTTTGACGAACTCAAGGACCTTTGGCAAGGGATA TTTGTCTCTTCAGCTTCCATTGGAGTATGGGTGGCTGCTTATATACTGAACGAAGTTCACGACAATGTCTTGTGGCTTCAAGTACTGTCAAGATTCATGC TTCTCGTTACGGCAAGCGTTCTTGTGCTGGCTTTCTTCTCTATGTCGATTTCGGAACCTTTGCATTCGCAAATCAGCTTAAGGAGAAGGGAACCTTCGGA GTTTCAAACAATGGGACAGGCACTTGGCATACCGGATAGCGGACTTCTCGTACAAAGAGATACAGCAGGACCGGCAGCCATTGATCCTGCCGAAACACTC GATAAACTTCTTCAGGACAAAAGGTTCCGCCATTCTTTTATGGCATTCGCTGACAGTTGCTTAGCCGGAGAAAGCGTGCATTTCTGCAACGAAGTACACG AACTTGGTAAACTTCCCACCGACGACCCTGTGAGAAGGATTTACATGGCGCGCCACATTATCGAGAAGTACATAGTTGCAGGTGCATCAATGGAGGTGAA CATTTCTCACAGAACTCGACAACAGATACTGACGACGACGGATCTGGCACACACTGATCTCTTCACTTCTGCACTGAATGAACTGATGCAGCTTATGAAA ACGAACCTGGCAAGAGATTACTGGTCATCCATTTATTACCTCAAGTTCAAAGATGAAGCAAGTGCTTGGTCAAGTAGCATCGAGATCGACGAAATCAGTC ATGGTGATGGTTGTGGTTGCTTCTCTCCTCGATTGAGCTCGGTGCATGGCGCTACTGATGATCCCTTCCACCATCAAGAACACCTTGTTAAAGGGTATGG ATGCAATAGTTGA
AA sequence Show only first row Show all	>Lus10006452 pacid=23172012 polypeptide=Lus10006452 locus=Lus10006452.g ID=Lus10006452.BGIv1.0 annot-version=v1.0 MASSKSCAILGGCPTDYIAIAIAILSLMLLVSKSVVPCLLHSVPRTNGSGFWFPVIQLLGSFNLLLSLVMSVNFLKLEKNYWWSSCYLWGVWFEGPLGFG LILSCRIAQAFQLYFIFVKRRLSPLKSYVFLPLVLLPWIAGAAYIHAKKAMNHRCHMGTRWIVPVACLHTLYVVGLLGCTRAIGHIEFKFDELKDLWQGI FVSSASIGVWVAAYILNEVHDNVLWLQVLSRFMLLVTASVLVLAFFSMSISEPLHSQISLRRREPSEFQTMGQALGIPDSGLLVQRDTAGPAAIDPAETL DKLLQDKRFRHSFMAFADSCLAGESVHFCNEVHELGKLPTDDPVRRIYMARHIIEKYIVAGASMEVNISHRTRQQILTTTDLAHTDLFTSALNELMQLMK TNLARDYWSSIYYLKFKDEASAWSSSIEIDEISHGDGCGCFSPRLSSVHGATDDPFHHQEHLVKGYGCNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26090		ATRGS1, RGS1	REGULATOR OF G-PROTEIN SIGNALI...		Lus10006452 [exp]	0	1
AT3G26090		ATRGS1, RGS1	REGULATOR OF G-PROTEIN SIGNALI...		Lus10011395 [exp]	2.2	0.9091
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10033000 [exp]	10.6	0.9048
AT3G21865		PEX22	peroxin 22 (.1)		Lus10015100 [exp]	12.4	0.9054
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10014505 [exp]	12.7	0.8989
AT4G18270		ATTRANS11	ARABIDOPSIS THALIANA TRANSLOCA...		Lus10023316 [exp]	13.6	0.9030
AT5G19930			Protein of unknown function DU...		Lus10033068 [exp]	14.4	0.9004
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Lus10003911 [exp]	16.5	0.8889
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10015188 [exp]	17.1	0.9080
AT1G11340			S-locus lectin protein kinase ...		Lus10013910 [exp]	19.3	0.9009
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10041148 [exp]	19.4	0.9012

Compare expression of checked genes

Lus10006452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.