Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00930 83 / 1e-15 CIP4.1 COP1-interacting protein 4.1 (.1) AT5G37190 80 / 9e-15 CIP4 COP1-interacting protein 4 (.1) AT4G00920 69 / 4e-12 COP1-interacting protein-related (.1) AT1G55860 67 / 7e-11 UPL1 ubiquitin-protein ligase 1 (.1.2) AT2G01800 65 / 7e-11 COP1-interacting protein-related (.1.2.3) AT4G00580 65 / 1e-10 COP1-interacting protein-related (.1) AT1G30060 61 / 3e-10 COP1-interacting protein-related (.1) AT2G02770 62 / 1e-09 4'-phosphopantetheinyl transferase superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011397 [exp] 1645 / 0 AT4G00930 83 / 8e-16 COP1-interacting protein 4.1 (.1) Lus10000702 [exp] 246 / 8e-73 AT2G01800 54 / 4e-08 COP1-interacting protein-related (.1.2.3) Lus10004051 [exp] 48 / 3e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052200 [exp] 104 / 3e-22 AT4G00930 95 / 2e-19 COP1-interacting protein 4.1 (.1) Potri.007G102500 [exp] 66 / 7e-11 AT1G55860 95 / 2e-20 ubiquitin-protein ligase 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006453 pacid=23171983 polypeptide=Lus10006453 locus=Lus10006453.g ID=Lus10006453.BGIv1.0 annot-version=v1.0 ATGGCCGAACTGGCGATGCAGGCGGCCGGACATGGCGGCGGAGCTTCCTTCATCAAGACCCTTTACATCGAAACTACGCTCGGCACGAACTTTGCCATGC AGGTCTCTTCCTCCAACACCATCGCCGATGTCAAGAGGAGGATAATCGAAGAGCATCCAGTGTGTTTCCCCGAGTGTGGAGCGATAAGGGTTAATGGATT GAAGGTGAAAAGGGAAGGGGTGTACTTTCACTTGGCGGAGTCTATGCTTGTGGAGGGTGCATTTGATGGATGTAATACAAGTTGGTGGTTCATCATCGTT GAAGCTTCTGTTGTTGTTTGTAAGGGTAAGGAAATTGTAGGGATTCAGAATTGTGAAGAGGAGGCAAAGTTGGCTTTAGTGAATGTTAAGAAGAATGGTT CTGAGAAGGAGCCTACTAGCTCATTGGACCAGAATGGCTCCCGTGGTGCTGATGATCTTGCTATTGCAGTTGTTGAGACGGCTCAACTTAGGGGTGGATT TAAGGGCGAAAAAGTTGTGTCCTTTGGAGTGGTTGTTGGTTCTGAGTCTCGTAGGGAGCAGAAGAGTGATGGACAAGCTCAGGATATGGAAGTTCAAGCA ACAAATACTAAGATCGATGGCAGCATGTTGCGAGTAGGAGATTTGGATCGTCAGTTTGATGAACAAGCTCGGGAGTTGGAAGTTCGAGTAATGGAAAATA GGATGGATGACAGCGTATTGGAGGGAGGAGATTTGAATGATGATTCCAATGCGAAGGAAAAACATAAGAAGAGGAAGAGAATCGAAAATGCTTCAGCTGA GGGCCCTGAAGTTCAAGTGGAACATGGTGAACCTGCTAAGGATGAATCCAAGAAGGATGGTTTGGTCAGGGAGCGAAGTGATAAACCATCCATGGAAACT TCCGAGCCTGTTGCGAAGAGGCTCAAGACTGGAAAGGAGGAGATGGTGAATGAAGGGAGAACCATGGTTCCAGAATCTACTGAAATGATTTTGGAGCCTC CTACAGTGTTTGAACTACCTGCAGTTGTTGATGGGAAGATTAAAAGGAAGAAGAAGAAGAATTCCTCCAAGAAATTGGAGAAAGAAACCAATGTGGTTGA TGAGATATCGCAAAAGCAAGCTAGAAGTGGCTGTGGAAATGTGGTTTCAGACCTGAATGATACGACTTCTGAGCTTCCTACAGTGTCTCAATTGCCCGTG GGAGATGAACAACAACTCGTGAATGCTGCTGTGGAGGGTTTAGATGCTGAAGCTAAGAAAAAAAGAAAGAATAAGTCCTCCAAGAAAAAAGATAAACAAG TCAATACTGTTGATGAGCAACAATCTATGAACGAAGCTCGAGGTGATGATGGAAATGTGGTTTCAGAACCGAATGATATGGCTTGCGAGCCTCCTACAGT TTCTCAACTACCTGTAGGAGATGAAGAACAACTCGTGAGTGCTGCTGTGGGAGCTTCAGATGCTGAGTCAAAGAAATCCTCCGGGAAATCGGATAAAGAA ATGGATGCTAGTGCTGGGGTATCTCTGAAGGAAGCTATAAATGACAATGTAAATGTGATTTCGGAATCGAATAATATGAATTGTGACCCTCATATTGTTT CCCAGCTACCTACAGGAGATGGTCAACAACTTGTAAATGCTACCGTTGATGGTTCAGAAGCCGAAGCTAACAAGAAAAGAAAAAAGAAGTCCAAGAAAGA AGTCAATGCTGTTGATGAGAAGTCTATGAACGAAGCTCGAGGTGACAATGGAAATGTGGTTCCGGAACCGGATGCTGACACAAAGAAGAAGAAGAGAAAA AAGAAAAAGTCCTCCAATAAAATGGAAAAAGAAGTCAATGCTGATGTTGACCAATCTCTGAAGGAAGCAGGAGGAGATGGCAATGGAAATGTGGTTTCAG GACCGAATCATGCACCAGCTATCGTACAAAAGGAGGCAGATGAACACATGTTGAACGACAAGGACACCGCTCCTGTCCAAGAGGCGGATCATAACAATTT TCCTTCACAAGTACCTGATGAGATGCATAGAATTGAAACCGAAAAACCCATAGCTACAGAAGTGGTGAAAGAAGTTTACTCTGAATTGCCTGAGCCTGTT CCATCTCTGGGTCTTTCTGCATTGAAGAAACGGAAGAAATCCAGAAAGCATAAGGATTTATTGAGTGGCACACCAGTTACTTCAGAGTTAGGATTTGTTA AGGACGCTGCCATTGATAACTCGATTCACGAAGCTGCTGAGAAAGGTAGTGATCCCCCTGCCAAGGATGGGAAAGAAGTAGTAGTAGCAGAAAGCCTCAA GGCCTCGCTTTTGGTTACTGATGAGGAAATCAATGAAGTTATCAAGAATGTGATTGATTCTGTTCCCCAGGCCTTGGAAACCAAAGCTGTGGCGGAAGTG AAAGAGCGGAAATCAAAGAAGAAATTAAAGAAGAAGTATGATTCAGATGCTAAGATCTCCCCACAGACACAAGCAGAAGACGAGAACACTGGCGAAAATA GTCCAGTCCCACTCACTGATGCAGCGAGTACTCGTACCGGTAACTCGCTAGCTAAAGCAAGCAAGATTGGTAATGATGCAGAAGAACTCAGCAACAATAG TGGAGTCAACTTTATGGCTTATTTCTCACCTACTGAACAGGACAATAAAACTTCTGATCATAGTGAGATTACTGTTACAACGAAAGGTGAAAACAAAAGG AAAGTACAAGATAACGTGACACCCAAGTTACCTGAGGATCCTCCAAGTTTGACAGGGAAACGTGGGTCTGAAGCAAACCCTCATGTTGTCAGCTCTGGCA AGGAGAACAAGCGTAATGAAGTCCAACAACATTCTGAAAGCTTTACCAACTCGACCTCGAAACCTAAGAGAAGTAACAAGGTTCAGTCTTTAACCCAGAA AAAAGGCAATGTAAAGGGTGGAAGGAGAGGTTCTGATGCTAATACAGGGGAGGTTCTGAATGGCACTGTTCGTAGAAAACCGTTCCCCTTTAAAATGAAT CTGTTTGGTGATGGCTCTGATGATACCCTTGAGAACTATGTGTTTCCATCTCAACGATCCAGCACTCCGGAGCCAGATTCCGATGTTTTGTCAGATCCAG ATGGAGAAAGTGATGCAGGATTCGACGGTGAGACGAGAAATATCAGCGGTGGTAGGGAAGGCATGAAGACGCCATTCCCACCAGGCGTTTCCCTGGGGAC GATCCTGAAAAGTTCAAAGAGATTCAAGAAGGCCAAGCTTGATGCAGAATCGCAGCCCGACGATTTCATCCCGATGAGCCCGAGCAGACCTCGGAAGGAA GAAACAAAGAACGAAACTTTCTCCCTCGCTCAGCTACCCACCACCATTCGGCATCAGAGATTGAAGATTCCCAGTTGTCTCACTGAGCTAAGCTCTCACT CAGCTCAAATTCTTGAGTTCTTCAGCGGAAGTGGAAGAAAAGCTTCAATCTTTCAACCAACTTCGTAG
AA sequence Show only first row Show all	>Lus10006453 pacid=23171983 polypeptide=Lus10006453 locus=Lus10006453.g ID=Lus10006453.BGIv1.0 annot-version=v1.0 MAELAMQAAGHGGGASFIKTLYIETTLGTNFAMQVSSSNTIADVKRRIIEEHPVCFPECGAIRVNGLKVKREGVYFHLAESMLVEGAFDGCNTSWWFIIV EASVVVCKGKEIVGIQNCEEEAKLALVNVKKNGSEKEPTSSLDQNGSRGADDLAIAVVETAQLRGGFKGEKVVSFGVVVGSESRREQKSDGQAQDMEVQA TNTKIDGSMLRVGDLDRQFDEQARELEVRVMENRMDDSVLEGGDLNDDSNAKEKHKKRKRIENASAEGPEVQVEHGEPAKDESKKDGLVRERSDKPSMET SEPVAKRLKTGKEEMVNEGRTMVPESTEMILEPPTVFELPAVVDGKIKRKKKKNSSKKLEKETNVVDEISQKQARSGCGNVVSDLNDTTSELPTVSQLPV GDEQQLVNAAVEGLDAEAKKKRKNKSSKKKDKQVNTVDEQQSMNEARGDDGNVVSEPNDMACEPPTVSQLPVGDEEQLVSAAVGASDAESKKSSGKSDKE MDASAGVSLKEAINDNVNVISESNNMNCDPHIVSQLPTGDGQQLVNATVDGSEAEANKKRKKKSKKEVNAVDEKSMNEARGDNGNVVPEPDADTKKKKRK KKKSSNKMEKEVNADVDQSLKEAGGDGNGNVVSGPNHAPAIVQKEADEHMLNDKDTAPVQEADHNNFPSQVPDEMHRIETEKPIATEVVKEVYSELPEPV PSLGLSALKKRKKSRKHKDLLSGTPVTSELGFVKDAAIDNSIHEAAEKGSDPPAKDGKEVVVAESLKASLLVTDEEINEVIKNVIDSVPQALETKAVAEV KERKSKKKLKKKYDSDAKISPQTQAEDENTGENSPVPLTDAASTRTGNSLAKASKIGNDAEELSNNSGVNFMAYFSPTEQDNKTSDHSEITVTTKGENKR KVQDNVTPKLPEDPPSLTGKRGSEANPHVVSSGKENKRNEVQQHSESFTNSTSKPKRSNKVQSLTQKKGNVKGGRRGSDANTGEVLNGTVRRKPFPFKMN LFGDGSDDTLENYVFPSQRSSTPEPDSDVLSDPDGESDAGFDGETRNISGGREGMKTPFPPGVSLGTILKSSKRFKKAKLDAESQPDDFIPMSPSRPRKE ETKNETFSLAQLPTTIRHQRLKIPSCLTELSSHSAQILEFFSGSGRKASIFQPTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37190		CIP4	COP1-interacting protein 4 (.1...		Lus10006453 [exp]	0	1
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10030551 [exp]	3.3	0.9371
AT4G10790			UBX domain-containing protein ...		Lus10003214 [exp]	4.5	0.9251
AT5G04590		SIR	sulfite reductase (.1)		Lus10030131 [exp]	4.6	0.9322
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Lus10014659 [exp]	6.5	0.9312
AT4G00930		CIP4.1	COP1-interacting protein 4.1 (...		Lus10011397 [exp]	7.1	0.9312
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10029796 [exp]	7.6	0.9354
AT1G76820			eukaryotic translation initiat...		Lus10012856 [exp]	8.0	0.9313
AT1G03280			Transcription factor TFIIE, al...		Lus10019269 [exp]	11.7	0.8992
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10021355 [exp]	13.4	0.9183
AT2G43970			RNA-binding protein (.1.2)		Lus10025608 [exp]	13.5	0.9103

Compare expression of checked genes

Lus10006453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.