Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24490 476 / 6e-165 ALB4, ARTEMIS ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2) AT2G28800 417 / 2e-142 ABL3, ALB3 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011398 [exp] 672 / 0 AT1G24490 363 / 4e-121 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2) Lus10040841 [exp] 381 / 2e-128 AT2G28800 586 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4) Lus10016570 [exp] 362 / 4e-121 AT2G28800 557 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G051900 [exp] 520 / 0 AT1G24490 501 / 3e-174 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2) Potri.008G182000 [exp] 498 / 2e-173 AT1G24490 503 / 3e-175 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2) Potri.009G029100 [exp] 405 / 3e-138 AT2G28800 545 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4) Potri.001G237800 [exp] 398 / 4e-135 AT2G28800 566 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0376 [flax] [poplar] Oxa1 PF02096 [flax] [poplar] 60KD_IMP 60Kd inner membrane protein
Representative CDS sequence Show only first row Show all	>Lus10006454 pacid=23171989 polypeptide=Lus10006454 locus=Lus10006454.g ID=Lus10006454.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCTGCTTTCCCTTCAGTACTCCCCTCTGCCGCTCTCTCTTCCTTCCCTGAAAGGACCAGACCCTTCCCGAAGAACCATTTACTCCGAAGGC CGTACTTTCCCGCCGGATTAACATCCATTCACAAGCCTTCCCTTCGGAGCTGCGGCGTCGCTCGGTTCGGATTCCACCCGGGTTCTTTTGCCGAGTCGAA CCTGTTCGAGAGACTCGAGAGTGTTATCTACACGATTGCCGATGCTGCGGTGGCGAATTCCGATGTTATCGACTCGGCTACTACTACCACCGCTAAGCAG AACAATGATTGGTTCTCTGGAATTACCTATTACATGGAGAGCATTTTGAAGGTTTTGAAGGATGTGTTATCGACTTTGCACGTTCCTTATTCATACGGTT TTGCTATCATACTGTTGACGATTATGGTTAAGGCTGCGACTTTCCCTTTGACTAGGAAGCAGGTGGAATCTGGAATGGCTATGAGGTCTTTGCAGCCTCA GGTGAAGGCTATTCAGGAACGGTATGCTGGAGATCAGGAGAAGATCCAGCTCGAGACTGCTCGGGTGTATAAGCTCGCAGGAGTCAACCCTCTTGCAGGA TGCTTGCCTACTCTCCTTACAATACCAATATGGATCGGACTGTATAGAGCCTTTTCCAACGTGGCAGACGAGGGACTCCTCACTGAAGGGTTCTTCTGGA TACCGTCCCTCTCTGGTCCGACTACAATTGCAGCTCGCCAAAGTGGCGGTGGCATTTCCTGGCTCTTCCCTTTTGTAGATGGACATCCGCCACTTGGGTG GTCAGACACCTTAGCTTACCTTGTCTTGCCCGTGTTGCTGGTTCTTTCGCAATTCATTTCCATCGAGATAATGCAATCATCACAGCCGCAGAGTGACGAT CCAAATGTGAAGAATTCTCAAGCTATAACCAAGTTCCTTCCTTTGATGATCGGCTATTTCTCACTTTCGGTTCCTTCTGGTTTAAGCCTTTACTGGTTCA CGAATAATGTGCTGAGCACGCTACAGCAAGTCTGGCTTCAAAAGCTGGGAGGCGCGAAAAATCCGGTGAAGCAACAGAACGATGATCTGATAAAAAAGGT CAAGACTGAGAAGCCTGCTTTGGATATGAACTCCATGAAAGCTACAACGGTTGAAATCAAGTCCACGAAAGTCACGACCGTGAAGGAAGAAAAGTCTACA CCTGAAGGGCTACGTCCTGGTGAAAGATTTAAGCGTTTGAAAGAGGAGGAAGCTAGGAGACGAGAGGAAGAGAAGCGGAAAGCTGAAGAAGCATCCCACA AAGCCACGGTCCCTAACGGTTCTGTGAATGGTCAGGACAATACGAAAGACGAGAAGCCGGCTACCCAAGCTGATGCAGAGAATCAAGTTTCTTCCAATGG CAATGTTAATAGGAAGAAAGAGGAGCAGTCTGATGAGGAAAAAAACCAGAAGGAAGCAATCGAATCATAG
AA sequence Show only first row Show all	>Lus10006454 pacid=23171989 polypeptide=Lus10006454 locus=Lus10006454.g ID=Lus10006454.BGIv1.0 annot-version=v1.0 MAAAAFPSVLPSAALSSFPERTRPFPKNHLLRRPYFPAGLTSIHKPSLRSCGVARFGFHPGSFAESNLFERLESVIYTIADAAVANSDVIDSATTTTAKQ NNDWFSGITYYMESILKVLKDVLSTLHVPYSYGFAIILLTIMVKAATFPLTRKQVESGMAMRSLQPQVKAIQERYAGDQEKIQLETARVYKLAGVNPLAG CLPTLLTIPIWIGLYRAFSNVADEGLLTEGFFWIPSLSGPTTIAARQSGGGISWLFPFVDGHPPLGWSDTLAYLVLPVLLVLSQFISIEIMQSSQPQSDD PNVKNSQAITKFLPLMIGYFSLSVPSGLSLYWFTNNVLSTLQQVWLQKLGGAKNPVKQQNDDLIKKVKTEKPALDMNSMKATTVEIKSTKVTTVKEEKST PEGLRPGERFKRLKEEEARRREEEKRKAEEASHKATVPNGSVNGQDNTKDEKPATQADAENQVSSNGNVNRKKEEQSDEEKNQKEAIES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Lus10006454 [exp]	0	1
AT2G04360			unknown protein		Lus10000124 [exp]	7.1	0.7797
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10004360 [exp]	12.5	0.7846
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10008616 [exp]	13.6	0.7581
AT1G08490		ATSUFS, SUFS, A...	chloroplastic NIFS-like cystei...		Lus10031670 [exp]	17.9	0.6880
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10041406 [exp]	20.9	0.7755
AT2G20830			transferases;folic acid bindin...		Lus10018558 [exp]	23.9	0.7598
AT2G39670			Radical SAM superfamily protei...		Lus10002698 [exp]	25.0	0.7391
AT2G46915			Protein of unknown function (D...		Lus10010092 [exp]	30.3	0.7421
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Lus10013645 [exp]	31.6	0.6928
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10006894 [exp]	32.6	0.7537

Compare expression of checked genes

Lus10006454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.