Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26100 750 / 0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT3G15430 162 / 1e-43 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G63860 125 / 6e-31 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G16040 111 / 2e-26 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G02510 103 / 9e-24 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT1G76950 104 / 3e-23 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G12350 103 / 8e-23 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 100 / 9e-22 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G42140 100 / 1e-21 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 93 / 1e-19 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011399 [exp] 977 / 0 AT3G26100 805 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10006242 [exp] 776 / 0 AT3G26100 796 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10036945 [exp] 538 / 0 AT3G26100 565 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10039618 [exp] 118 / 2e-28 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10033543 [exp] 117 / 3e-28 AT3G02510 648 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10017581 [exp] 115 / 8e-28 AT3G02510 636 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10037192 [exp] 108 / 2e-24 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10029536 [exp] 104 / 8e-24 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10036030 [exp] 105 / 2e-23 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G018600 [exp] 824 / 0 AT3G26100 798 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.015G009400 [exp] 817 / 0 AT3G26100 809 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.001G402800 [exp] 170 / 1e-46 AT3G15430 723 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.011G121900 [exp] 159 / 1e-42 AT3G15430 743 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.007G100200 [exp] 122 / 4e-30 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G113200 [exp] 120 / 1e-29 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G101800 [exp] 118 / 6e-29 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G139600 [exp] 112 / 1e-25 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.001G276900 [exp] 103 / 9e-23 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 101 / 2e-22 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10006455 pacid=23171985 polypeptide=Lus10006455 locus=Lus10006455.g ID=Lus10006455.BGIv1.0 annot-version=v1.0 ATGGAAACCACAGCTAGTGGGACTCATCCATCAACAGTTCAATACCTTGAACCACCCATCACTACTGCAATTGTTGTGTCTCAACCTCCCACATTCCAGA GAAACAAACGCCATTGCTATGGAGACTCCTCATGTACTCCTGGAGAGTTCCCTTTAGCTGCTAACCCTTCAATTGTCCTTCATGTCCTCACCACATGTAA CTTTGACCCACAAGACCTAGCCAAGTTAGAGGCAAGTCGTTTCGCGACGTGTTCGCTCTTTAGACAGCCAGCGAACTTCGCACCTGATTTCGAGCTGTCC ATATCGGAGCTTGCTGCTCTTGACATTTGCCGGAAACGGACCATATTCAGATCGATGCAAAGTGACGAGATTTCTGAATTGAAGCTGAAATGCGGAGGGT CTTGGAAGTTGGTGCTGAGGTTTTTGTTGGCTGGTGAAAAATGTGTTTCGCAGGCTGTAGCTGGGCCTGGTCATAGCATTGCAGTGACCTGCAATGGTTC CGTTTACTCCTTTGGCTCGAACAGCTCAGGACAACTCGGCCATGGCACTACAGAAGATGAGTTCCGGCCTCGCTTAATCAGATCGTTGCAAGGAATCAGG ATCGTTCAAGCATCTGCTGGTCCGGGCAGGACAATGCTGATAAGCGACACCGGTCGAGTCTATGCATTCGGTAAGGACTCGTTCGGAGAGTCCGAGTATG GCGTTCAGGGTTCCAAAATGGTTACAACTCCGCAACTGGTGGAATCGTTGAAGAACATTTTCGTCGTGCAAGTTGCGATTGGGAACTTCTTTACTGCTGT ATTGTCAAGGGAAGGACAAGTCTATACATTCTCTTGGGGAATCGATGGAAAGCTCGGTCACCAAACCGAACCGAACGATCTCGAGCCTCACCCTTTGTTG GGAGCACTTGAGAATGTACCTGTAGTGCAAATTGCTGCTGGCTATTGCTACCTTCTTGCTCTTGCTTGTCACCCAAGTGGCATGTCGGTTTACTCGGTTG GATGTGGATTAGGCGGGAAGCTTGGACACGGATCGAGAACAGACGAGAAGTACCCTCGATTAATCGAGCAGTTTCAGGAGTTAAACTTTCAGCCTACAGT GATTTCAGCCGGGGCGTGGCATGCAGCAGTAGTCGGTAAGGATGGACGAGTAAGCACGTGGGGGTGGGGGCGGTACGGGTGTTTAGGCCACGGTACCGAA GAATGTCAGTCGGTTCCGAAAATTGTGGAGGCTCTGAGCAATGTCAAAGCAGTCCATGTAGCTACAGGAGACTACACGACTTTCGTGGTCTCCGAAGATG GCGATGTGTATTCGTTCGGTTCTGGCGAATCCTCTAGCCTCGGTCACTATGCCATTGTCGATGAACAGCAAGTGAACAGGGTCGAGAACGTGTTGAGCCC CGAGCAAGTGACATTGCTAAAGGAATTGAATGAAAGAGTGGTGCGGATCAGCCTGACCAACTCGATCTACTGGAACGCGCACACTTTCGCTCTGACCGAA TCAGGTAAGCTCTACGCATTCGGAGCAGGGGACAAAGGGCAGCTCGGGGTCGAGCTGTCGAACAACCAGACCGAAAGGGTAAAGCCAGAACGAGTGGATG TTGATCTCCGCTAA
AA sequence Show only first row Show all	>Lus10006455 pacid=23171985 polypeptide=Lus10006455 locus=Lus10006455.g ID=Lus10006455.BGIv1.0 annot-version=v1.0 METTASGTHPSTVQYLEPPITTAIVVSQPPTFQRNKRHCYGDSSCTPGEFPLAANPSIVLHVLTTCNFDPQDLAKLEASRFATCSLFRQPANFAPDFELS ISELAALDICRKRTIFRSMQSDEISELKLKCGGSWKLVLRFLLAGEKCVSQAVAGPGHSIAVTCNGSVYSFGSNSSGQLGHGTTEDEFRPRLIRSLQGIR IVQASAGPGRTMLISDTGRVYAFGKDSFGESEYGVQGSKMVTTPQLVESLKNIFVVQVAIGNFFTAVLSREGQVYTFSWGIDGKLGHQTEPNDLEPHPLL GALENVPVVQIAAGYCYLLALACHPSGMSVYSVGCGLGGKLGHGSRTDEKYPRLIEQFQELNFQPTVISAGAWHAAVVGKDGRVSTWGWGRYGCLGHGTE ECQSVPKIVEALSNVKAVHVATGDYTTFVVSEDGDVYSFGSGESSSLGHYAIVDEQQVNRVENVLSPEQVTLLKELNERVVRISLTNSIYWNAHTFALTE SGKLYAFGAGDKGQLGVELSNNQTERVKPERVDVDLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26100			Regulator of chromosome conden...		Lus10006455 [exp]	0	1
AT3G24740			Protein of unknown function (D...		Lus10011876 [exp]	1.4	0.8607
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10035041 [exp]	4.9	0.8502
AT5G04460			RING/U-box superfamily protein...		Lus10028827 [exp]	5.3	0.7746
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10030491 [exp]	7.3	0.7895
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Lus10015121 [exp]	9.6	0.7893
AT3G55520			FKBP-like peptidyl-prolyl cis-...		Lus10004714 [exp]	10.5	0.7626
AT3G26100			Regulator of chromosome conden...		Lus10011399 [exp]	12.2	0.7555
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10024485 [exp]	13.0	0.7809
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10043340 [exp]	13.5	0.7555
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10037080 [exp]	18.2	0.7652

Compare expression of checked genes

Lus10006455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.