Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67750 562 / 0 Pectate lyase family protein (.1) AT4G24780 561 / 0 Pectin lyase-like superfamily protein (.1.2) AT5G63180 549 / 0 Pectin lyase-like superfamily protein (.1) AT4G13710 535 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G27400 526 / 0 Pectin lyase-like superfamily protein (.1) AT3G24670 515 / 0 Pectin lyase-like superfamily protein (.1) AT4G13210 512 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G07010 512 / 0 Pectin lyase-like superfamily protein (.1) AT5G48900 507 / 9e-180 Pectin lyase-like superfamily protein (.1) AT1G04680 499 / 2e-176 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011400 [exp] 701 / 0 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10036946 [exp] 593 / 0 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10033037 [exp] 541 / 0 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022310 [exp] 524 / 0 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014887 [exp] 523 / 0 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022817 [exp] 521 / 0 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 521 / 0 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011885 [exp] 518 / 0 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023679 [exp] 513 / 0 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G182200 [exp] 580 / 0 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.015G087800 [exp] 572 / 0 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G051800 [exp] 569 / 0 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.012G091500 [exp] 568 / 0 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G339500 [exp] 554 / 0 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.003G175900 [exp] 513 / 0 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.002G238800 [exp] 510 / 1e-180 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G052300 [exp] 506 / 5e-179 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.014G178100 [exp] 504 / 3e-178 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.011G093400 [exp] 440 / 8e-154 AT5G63180 509 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10006456 pacid=23171971 polypeptide=Lus10006456 locus=Lus10006456.g ID=Lus10006456.BGIv1.0 annot-version=v1.0 ATGGAAACCCAATTGCTCTCTCTTCTTCTTCTTCTCTTAACTGTTCTTCAACTACCATCCCACATTGCATCCTCCCCGGTTCCGGATCCGGATCTTGTCG CCGATGAAGTCAACAGGATCATCACCAATGCTACAAATTCTCGAAGAAATCTAGGATTCCTCTCTTGCAAAACGGGGAATCCGATCGACGATTGTTGGAG GTGCGACTCGAGTTGGCACAAGAACCGAAAAAGACTAGCAGATTGCTCGATCGGGTTTGGCAAGAACGCGATTGGAGGGCGGGACGGTAAATTCTACGTG GTGACCGACTCGGGCGACCACCCGGTCAACCCAAAACCAGGGACTTTACGTTACGGGGTGATTAGAGACGAGCCACTTTGGATCGTGTTCGCTCGGGACA TGGTCATCAAGCTGAAAGCGGAGCTGATGATGAACTCTTTCAAGACGATCGACGGCAGGGGAGCCTCGGTGCACATAGCTGGGGGACCGTGCATCACGAT CCAGTATGTGAACAACATTATCATCCACGGGATCAACGTCCACGACTGCAAATCGGGTGGGAACTTGAACGTTAGGGACTCCCCCGAGCATTTCGGTTGG AGGACTAGATCGGACGGAGATGGGATATCGATCTTCGGTGGGAGCCACGTTTGGGTCGACCATGTCTCGTTGTCCAATTGTCAGGACGGGTTGATCGACG CGATTCACGGGTCGACGGCGATCACGATCTCAAATAACTACATGACCCACCACAATAAGGTCATGTTGTTGGGACATAGTGATGGGTTTGTTAGGGACAA GATTATGCAAGTCACTATTGCCTTTAACCACTTTGGTGAAGGGTTGGTCCAAAGGATGCCAAGGTGTCGGCATGGGTACTTCCACGTGGTGAACAATGAC TACACTCATTGGCTAATGTATGCAATTGGTGGGAGTGCTTCTCCAACCATCAATAGCCAAGGGAATCGTTTCTTGGCACCAAATGATAAGTTCAACAAAG AGGTGACGAAACGGGAGGAAGCAGGGGAGAGCGAGTGGAAGAAGTGGAACTGGAGATCGGAAGGGGATCTATTGCTCAACGGTGCATTCTTCACGAGGTC CGGAGCCGGAGCATCATCGAGCTATGCTAAAGCATCGAGCTTGGGAGCTAGGCCTTCTTCTCTTGTGGGTCCACTCACTAGTGGTGCTGGTTCACTTGTT TGCAAAAAAGGATCATCTTGCTGA
AA sequence Show only first row Show all	>Lus10006456 pacid=23171971 polypeptide=Lus10006456 locus=Lus10006456.g ID=Lus10006456.BGIv1.0 annot-version=v1.0 METQLLSLLLLLLTVLQLPSHIASSPVPDPDLVADEVNRIITNATNSRRNLGFLSCKTGNPIDDCWRCDSSWHKNRKRLADCSIGFGKNAIGGRDGKFYV VTDSGDHPVNPKPGTLRYGVIRDEPLWIVFARDMVIKLKAELMMNSFKTIDGRGASVHIAGGPCITIQYVNNIIIHGINVHDCKSGGNLNVRDSPEHFGW RTRSDGDGISIFGGSHVWVDHVSLSNCQDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDGFVRDKIMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNND YTHWLMYAIGGSASPTINSQGNRFLAPNDKFNKEVTKREEAGESEWKKWNWRSEGDLLLNGAFFTRSGAGASSSYAKASSLGARPSSLVGPLTSGAGSLV CKKGSSC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67750			Pectate lyase family protein (...		Lus10006456 [exp]	0	1
AT1G49750			Leucine-rich repeat (LRR) fami...		Lus10019830 [exp]	3.9	0.8790
AT5G41140			Myosin heavy chain-related pro...		Lus10024517 [exp]	5.0	0.8308
AT1G51940			protein kinase family protein ...		Lus10037586 [exp]	5.5	0.8452
AT1G30700			FAD-binding Berberine family p...		Lus10035466 [exp]	6.0	0.8296
AT1G54200			unknown protein		Lus10026463 [exp]	8.8	0.8193
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10003888 [exp]	9.1	0.8486
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10042806 [exp]	9.5	0.8240
AT1G67750			Pectate lyase family protein (...		Lus10011400 [exp]	10.7	0.7933
AT5G47900			Protein of unknown function (D...		Lus10039223 [exp]	11.0	0.8445
AT1G69710			Regulator of chromosome conden...		Lus10036737 [exp]	14.5	0.7618

Compare expression of checked genes

Lus10006456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.