Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020204 [exp] 127 / 6e-39 ND / Lus10001729 [exp] 92 / 4e-22 AT5G55390 622 / 0.0 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10002269 [exp] 83 / 5e-20 AT5G55390 174 / 8e-50 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10021139 [exp] 44 / 4e-06 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006458 pacid=23171998 polypeptide=Lus10006458 locus=Lus10006458.g ID=Lus10006458.BGIv1.0 annot-version=v1.0 ATGCAGGCACTTGAAAACATCATGTGTAAAAACTGTCTATATAAGATGTATCAGTGCGGTAGACTTGGTTCTTCTGCCAAATCTCCAAGCCAAGAGGATG AAGAAGCTGATGGAAGACTCGGCTCTGCTGAGTATGAGAAAGAGAAGGCCATGATTTTGGACAGAGCCCGTAAGGCTGGACATCACCACCGGATTCGCCA AGTCTCTCATGTTTGGACACATCGAGAACTATGTCCAGTCCAGGCTGTTCGTACCGCTAAAGAATCTCGAGATAACAACGGCAGTATTGACGAAGCTCTT GCTGTTTCCCCAAGAGATACTCTGACCACTCTATACCAATGGGAGAAACAGGGGGAACCTGGGATTGTGGCAGTTGGAAGTAGCTTTCCATTTGCTTGCT TCTTAGGTTTCAATGCTGTTCAGAAAGAACAGCCGGAGTTGGAGACAGTAAGGATGTCCGGTTAA
AA sequence Show only first row Show all	>Lus10006458 pacid=23171998 polypeptide=Lus10006458 locus=Lus10006458.g ID=Lus10006458.BGIv1.0 annot-version=v1.0 MQALENIMCKNCLYKMYQCGRLGSSAKSPSQEDEEADGRLGSAEYEKEKAMILDRARKAGHHHRIRQVSHVWTHRELCPVQAVRTAKESRDNNGSIDEAL AVSPRDTLTTLYQWEKQGEPGIVAVGSSFPFACFLGFNAVQKEQPELETVRMSG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006458 [exp]	0	1
AT3G27970			Exonuclease family protein (.1...		Lus10022230 [exp]	1.0	0.9071
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10011505 [exp]	1.4	0.7774
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10043009 [exp]	4.0	0.7651
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10026685 [exp]	7.7	0.7227
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009477 [exp]	11.5	0.7712
					Lus10002415 [exp]	15.8	0.6724
					Lus10024749 [exp]	29.0	0.6822
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10014439 [exp]	43.4	0.6918
AT2G30530			unknown protein		Lus10034444 [exp]	48.9	0.6911
					Lus10021106 [exp]	64.8	0.6545

Compare expression of checked genes

Lus10006458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.