Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50260 307 / 4e-105 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G48340 290 / 3e-98 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT3G48350 282 / 4e-95 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1) AT5G45890 261 / 4e-87 SAG12 senescence-associated gene 12 (.1) AT5G43060 256 / 1e-83 Granulin repeat cysteine protease family protein (.1) AT4G36880 250 / 2e-82 CP1 cysteine proteinase1 (.1) AT3G19390 250 / 1e-81 Granulin repeat cysteine protease family protein (.1) AT3G49340 244 / 1e-80 Cysteine proteinases superfamily protein (.1) AT4G35350 244 / 2e-80 XCP1 xylem cysteine peptidase 1 (.1.2) AT4G11310 243 / 9e-80 RD21A, RD21 Papain family cysteine protease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018083 [exp] 305 / 5e-104 AT5G50260 533 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10033040 [exp] 301 / 1e-102 AT5G50260 555 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10042078 [exp] 301 / 1e-102 AT5G50260 538 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10013674 [exp] 299 / 6e-102 AT5G50260 554 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10042691 [exp] 270 / 3e-92 AT5G50260 321 / 5e-110 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10029658 [exp] 273 / 5e-92 AT5G45890 383 / 4e-133 senescence-associated gene 12 (.1) Lus10042693 [exp] 271 / 3e-91 AT5G45890 379 / 1e-131 senescence-associated gene 12 (.1) Lus10029649 [exp] 269 / 2e-90 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Lus10002301 [exp] 269 / 3e-90 AT5G45890 397 / 1e-138 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G183100 [exp] 348 / 2e-121 AT5G50260 489 / 2e-174 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.015G087400 [exp] 315 / 2e-108 AT5G50260 550 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.012G090900 [exp] 313 / 2e-107 AT5G50260 561 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.015G087500 [exp] 294 / 5e-100 AT5G50260 530 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.013G118200 [exp] 283 / 2e-96 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 282 / 2e-95 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Potri.013G118400 [exp] 276 / 2e-93 AT5G45890 378 / 2e-131 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 272 / 1e-91 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.004G056100 [exp] 272 / 2e-91 AT5G45890 419 / 2e-147 senescence-associated gene 12 (.1) Potri.004G056258 [exp] 269 / 2e-90 AT5G45890 417 / 8e-147 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10006459 pacid=23171975 polypeptide=Lus10006459 locus=Lus10006459.g ID=Lus10006459.BGIv1.0 annot-version=v1.0 ATGGAGAGAATCGGAAGCTGCTGGGCATTTTCCACCGTGGCCGCCGTGGAAGGCATCAACAAGATCAGAACAGGGGAGCTAGTGTCTTTATCGGAGCAGG AGCTTGTAGATTGCAGCAAGGACAACAATGGCTGCGATGGAGGTCTAATGGAGCAAGCTTTCAAGTTCATAGAGCAAGTCGGCGGGCTAACCACGGAGAC CAACTATCCTTACGAAGCTAGAGATGAATCCTGCAACTCAGCCAAGTTGAATGTGGCCGCAGTTCAGATCGATGGGTACGAGAATGTGCCGGAGAACGAC GAGAACGCGCTGATGAAGGCTGCTGCTAACCAGCCGGTGGCGATCTCCATTGATGCTGGTGGCAGAGATCTCCAATTCTACTCTGAGGGAGTGTTCAACG GGCAATGCGGGACAGAGCTGAACCATGGGGTGGCACTCGTGGGGTACGGGTCGACTCAAGATGGCACGAAGTACTGGATCGTAAAGAACTCGTGGGGGAC GGAGTGGGGGGAGCAAGGCTACATAAGAATGCAGCGTGGGATCGATGCTGAAGAAGGTATATGTGGCATAGCTATGGATGCTTGTTACCCTGTGAAGGCC ACCACTCCACCCAGCTTTATCAAGAATACAACTGCCTCAAAGAAGGATGAACTGTAA
AA sequence Show only first row Show all	>Lus10006459 pacid=23171975 polypeptide=Lus10006459 locus=Lus10006459.g ID=Lus10006459.BGIv1.0 annot-version=v1.0 MERIGSCWAFSTVAAVEGINKIRTGELVSLSEQELVDCSKDNNGCDGGLMEQAFKFIEQVGGLTTETNYPYEARDESCNSAKLNVAAVQIDGYENVPEND ENALMKAAANQPVAISIDAGGRDLQFYSEGVFNGQCGTELNHGVALVGYGSTQDGTKYWIVKNSWGTEWGEQGYIRMQRGIDAEEGICGIAMDACYPVKA TTPPSFIKNTTASKKDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10006459 [exp]	0	1

Compare expression of checked genes

Lus10006459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.