Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24530 398 / 1e-136 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 300 / 2e-98 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 252 / 2e-80 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 228 / 7e-70 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 227 / 1e-69 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 227 / 2e-69 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 222 / 1e-67 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 205 / 6e-61 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 200 / 1e-60 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 200 / 1e-59 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011402 [exp] 637 / 0 AT1G24530 406 / 3e-140 Transducin/WD40 repeat-like superfamily protein (.1) Lus10036881 [exp] 447 / 7e-156 AT1G24530 409 / 5e-141 Transducin/WD40 repeat-like superfamily protein (.1) Lus10029206 [exp] 264 / 6e-84 AT1G24130 353 / 5e-119 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 260 / 6e-83 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1) Lus10043466 [exp] 259 / 1e-81 AT5G50120 399 / 3e-136 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 224 / 8e-69 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 223 / 4e-68 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024180 [exp] 221 / 1e-67 AT3G51930 494 / 2e-174 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039568 [exp] 217 / 5e-66 AT3G51930 498 / 6e-176 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G050900 [exp] 422 / 4e-146 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 302 / 2e-99 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 295 / 2e-96 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 244 / 4e-76 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 234 / 2e-72 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G022900 [exp] 222 / 2e-68 AT3G51930 523 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 222 / 2e-67 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 221 / 4e-67 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 222 / 6e-67 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G202700 [exp] 218 / 9e-67 AT3G51930 531 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10006460 pacid=23171967 polypeptide=Lus10006460 locus=Lus10006460.g ID=Lus10006460.BGIv1.0 annot-version=v1.0 ATGAAAATCCAATCATGGCTCACCGCCGGCAAAGCCTCCCCTGTTTCTGACCACCGCAACAATCACTCGGGCGACTCCACCACCACCTCATCTTCCACCT CCAATTCTCCATCCTCGTCAACCAGTAGCCTCCAGAGCAATCTCTCCCTCCAAACTCACCCTTCTATCCCTTCCCTCAACAAATCCCCTTTCAACTCCTC ATCATCCGCCGTCGCCGCCGACTTCCTCTGCTCCACCACTCTCCGACCAAGCTCCGACACCAACCCGATCACCTCCCTCTCCATCCATGGCAACCTCATC TATGCAGCCTCGGGCCACCAAATCTCCGTCTATGACCGCGCCACCTCCTCTCTCCTCGATTCTTTCAACGGATCCGGTGACTGCACCGGTTCCGTCAAGG CCTTCGCCTTCTCTGGCGACGGCCGTATCCTAACGGCTCATCAGGACTCCCGCATTCGCGCCTGGAAATCGAAATCGAAAAGTACCGAATCCAACTGGCA CAAATTAATTGCCGCCCTTCCAACGGCGGCGGACCGCCTCCGGCATTTCGCCTTTCCGAGCAGTTACGTCGCAGTGCGCCGCCACCGGAAAATCCTGAAA ATCCAGCATGCCGACGCGGTCTCTGACCTGGCAGTCAATGACAGCCAAATTTACTCAGTCTCGTGGGATCGGAGCTTGAAGATCTGGAAATCCTCGAGCC TCCGCTGCACTGAATCAATCCAGGCGGCTCATGACGACGCCATTAATAGCATCGTCGTTTCCAAAGACGGAATGGTTTACACCGGGTCAGCCGACTGCCG GATCAGGGTTTGGAACAAACCCGAATCCGGAAGCAGACATTCACTGGTGGCCACACTGGAGAAGCACAAGTCGGCAGTGAACACATTAGCATTAACCGGT GACGGGTCGGTTTTGTTCTCCGGGTCATGCGATCGGTCGATTTTGGTGTGGGAGAGGGAAGACACCGCCGACTATATGACGGTGATCGGAGCTCTGAGGG GCCACGAGAAAGCGGTGCTCTGTTTAATTAGGGTCGGAGATTTGTTGGTGAGTGGTTCCGCTGATCGGACAGTGAGGATATGGACACGAGGCGGCGGCGA GAAGTATTCTTGTTTGGCGGTTATGGACGGGCACAAGGCGGCGGTTAAGTCGTTGGCGGGCTTTTCGGAAGATGGTGTCGTTTGGGTGTATAGTGGAAGT TTGGATGGGGAGATTAAGGTGTGGAGAGTTGAGGTTAGATGA
AA sequence Show only first row Show all	>Lus10006460 pacid=23171967 polypeptide=Lus10006460 locus=Lus10006460.g ID=Lus10006460.BGIv1.0 annot-version=v1.0 MKIQSWLTAGKASPVSDHRNNHSGDSTTTSSSTSNSPSSSTSSLQSNLSLQTHPSIPSLNKSPFNSSSSAVAADFLCSTTLRPSSDTNPITSLSIHGNLI YAASGHQISVYDRATSSLLDSFNGSGDCTGSVKAFAFSGDGRILTAHQDSRIRAWKSKSKSTESNWHKLIAALPTAADRLRHFAFPSSYVAVRRHRKILK IQHADAVSDLAVNDSQIYSVSWDRSLKIWKSSSLRCTESIQAAHDDAINSIVVSKDGMVYTGSADCRIRVWNKPESGSRHSLVATLEKHKSAVNTLALTG DGSVLFSGSCDRSILVWEREDTADYMTVIGALRGHEKAVLCLIRVGDLLVSGSADRTVRIWTRGGGEKYSCLAVMDGHKAAVKSLAGFSEDGVVWVYSGS LDGEIKVWRVEVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24530			Transducin/WD40 repeat-like su...		Lus10006460 [exp]	0	1
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10029252 [exp]	6.0	0.9306
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	8.9	0.9305
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10012239 [exp]	9.6	0.9240
AT3G07570			Cytochrome b561/ferric reducta...		Lus10016080 [exp]	9.8	0.9199
AT1G66540			Cytochrome P450 superfamily pr...		Lus10032856 [exp]	10.0	0.9154
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10025987 [exp]	11.8	0.9189
AT3G47570			Leucine-rich repeat protein ki...		Lus10010199 [exp]	12.0	0.9106
AT5G10830			S-adenosyl-L-methionine-depend...		Lus10024476 [exp]	15.7	0.9187
AT2G03760		AtSOT12, AtSOT1...	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10031623 [exp]	15.7	0.9182
AT1G54650			Methyltransferase family prote...		Lus10006576 [exp]	16.7	0.9162

Compare expression of checked genes

Lus10006460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.