Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13130 612 / 0 Cellulase (glycosyl hydrolase family 5) protein (.1) AT3G26130 585 / 0 Cellulase (glycosyl hydrolase family 5) protein (.1) AT3G26140 573 / 0 Cellulase (glycosyl hydrolase family 5) protein (.1) AT5G17500 549 / 0 Glycosyl hydrolase superfamily protein (.1) AT5G16700 484 / 4e-167 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011403 [exp] 1100 / 0 AT1G13130 610 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10011404 [exp] 705 / 0 AT1G13130 605 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10006462 [exp] 694 / 0 AT1G13130 601 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10024686 [exp] 348 / 7e-113 AT3G26140 364 / 4e-120 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10032312 [exp] 279 / 3e-87 AT3G26140 298 / 2e-95 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10005737 [exp] 61 / 2e-11 AT3G26130 66 / 2e-14 Cellulase (glycosyl hydrolase family 5) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G183400 [exp] 702 / 0 AT1G13130 676 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Potri.010G049700 [exp] 695 / 0 AT1G13130 679 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Potri.010G049800 [exp] 542 / 0 AT1G13130 544 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Potri.001G097901 [exp] 366 / 2e-120 AT1G13130 393 / 2e-131 Cellulase (glycosyl hydrolase family 5) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00150 [flax] [poplar] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Lus10006461 pacid=23171957 polypeptide=Lus10006461 locus=Lus10006461.g ID=Lus10006461.BGIv1.0 annot-version=v1.0 ATGGCTAATCATAAGCATCACATTAACTTATTATCCACCATCTTCCTCCTCTTCCTCCTCCTCCCCCAAAAATCCACACCTTACCCACTCTCCACCTCCT CCCGGTGGATCGTCGACGACGATGCCGCAGGCCGGCGAGTCAAGCTGGCCTGCGTCAACTTGGTCTCCCACTTAGAACCCTTGGTGGCCGAGGGCCTCAG CAAACTACCCATTGAAGCCATCGCCGGAAAGATCACTTCTTTGGGGTTCAATTGCGTCCGGCTCACTTGGCCGATCTACTTGGTCACAAATGACTCGTTG GGTTCGCTCACCGTCCGGGAATCTTTCCGGCGGCTTGGGCTGTTTGATTCCCTCGCCGGGATTCAGGCCAATAATCCGGCCATCGTTGACCTTAGCCTTG TCATGGCTTTCCAGAATGTGGTCTCATCACTAGGAGAAAACAACGTGATGGTGATCCTAGACAACCATATCACCACACCGGGCTGGTGCTGCAGCAACAA CGACGGCAACGGGTTCTTCAACGATGAATTGTTCGATCCCGAGCTATGGATAACCGGCCTAACCAAAATGGCCACCATGTTCAGAGCCTCGACCAGTGTG GTAGGGATGAGTTTGAGGAACGAGCTACGCGGACCTAGGCAGAACACGAACGACTGGTACAAGTACATGCAGAGAGGGGCCGAGGCAGTCCACTCTGCAA ACCCTAACGTACTAGTCCTGTTGTCGGGGCTCAGCTTCGACACCGACTTGAGCTTCTTGAGCAGGAAGATGGTGAGCTTGAGCTTCAGAAAGAAGCTCGT GTTCGAGATGCATTGGTACGGGTTCTCGGACGGACAGGCGTGGGCCAATGGCAATGTGAATGATGTGTGTGGGAGAGTGGGCAGGGAGAAGGTGAGGAAT GGACTTTTCTTGGTGGAGAAAGGGTACCCTTTGTTTGTCAGCGAATTTGGACTCGACTTGCGAGGAACGAATGTGAACGATAATAGGTACGTGGATTGTT TCATGGCGTACGCCGCGGAGCATGACTTGGATTGGGCGTATTGGACGATCGTCGGGAGCTATTACCTTAGGCAAGGGGTTGTGGGGTTGAGTGAGGTCTA TGGGTTGTTGGATGTAGACTGGATGGAGTTGAGGAATCAGAGTTTTATAGAAAAGATCAAAGGGATTCAAGCACCCTTTCAAGGGCCTGGATTGGGAGAA AGGAGACAACATGAAGTGATATTCCACCCATCCACAGGGAAATGCATCCTAAGAGGGAAAACATATCTAGATTCACCAACTCTCGGACCCTGCACTGAAT CCGACGAATGGACCTTCTCCTCCAAAGGAACCCTATCCCAAGTAGGCACATACTTCTGCTTGAAGGCCAACGAGTTAGGACAACCAGTACAACTCGACAT AGACTGTTCAAACTGGACAATGATCTCTGATTCAAGGATGCACCTTTCGACCAAGCTAAAAGACGGGATATCATCAGTCTGCTTGGATGTCGATCCAGAC AACAACATCATCGCAAACCCTTGCAAGTGCTTGAGTAAAGACAAAGGGTGCGATCCGGTTAGCCAGTGGTTCAAGCTGGTGACCAGCACTAGGGCTCCAA GTGGGGAAGATGATGGATTGGTAACAAGAGCAAGGGAAATGTTGTTTAAGGTATTGGATTTGGTACTGTACTATATTGGAAGAATGTTTGGTACCTTGGC TCTAAAAATTGCTAGGGGAATTGAAGGTTAA
AA sequence Show only first row Show all	>Lus10006461 pacid=23171957 polypeptide=Lus10006461 locus=Lus10006461.g ID=Lus10006461.BGIv1.0 annot-version=v1.0 MANHKHHINLLSTIFLLFLLLPQKSTPYPLSTSSRWIVDDDAAGRRVKLACVNLVSHLEPLVAEGLSKLPIEAIAGKITSLGFNCVRLTWPIYLVTNDSL GSLTVRESFRRLGLFDSLAGIQANNPAIVDLSLVMAFQNVVSSLGENNVMVILDNHITTPGWCCSNNDGNGFFNDELFDPELWITGLTKMATMFRASTSV VGMSLRNELRGPRQNTNDWYKYMQRGAEAVHSANPNVLVLLSGLSFDTDLSFLSRKMVSLSFRKKLVFEMHWYGFSDGQAWANGNVNDVCGRVGREKVRN GLFLVEKGYPLFVSEFGLDLRGTNVNDNRYVDCFMAYAAEHDLDWAYWTIVGSYYLRQGVVGLSEVYGLLDVDWMELRNQSFIEKIKGIQAPFQGPGLGE RRQHEVIFHPSTGKCILRGKTYLDSPTLGPCTESDEWTFSSKGTLSQVGTYFCLKANELGQPVQLDIDCSNWTMISDSRMHLSTKLKDGISSVCLDVDPD NNIIANPCKCLSKDKGCDPVSQWFKLVTSTRAPSGEDDGLVTRAREMLFKVLDLVLYYIGRMFGTLALKIARGIEG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10006461 [exp]	0	1
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10039335 [exp]	1.0	0.9741
AT1G04970			lipid-binding serum glycoprote...		Lus10014625 [exp]	3.0	0.9686
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10037085 [exp]	3.5	0.9678
AT3G23640		HGL1	heteroglycan glucosidase 1 (.1...		Lus10035671 [exp]	6.3	0.9624
AT3G26380			Melibiase family protein (.1)		Lus10006467 [exp]	6.9	0.9648
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	7.2	0.9696
AT2G23450			Protein kinase superfamily pro...		Lus10032741 [exp]	7.7	0.9670
AT3G21530			DNAse I-like superfamily prote...		Lus10034003 [exp]	10.4	0.9452
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10007630 [exp]	11.7	0.9630
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10018383 [exp]	11.8	0.9611

Compare expression of checked genes

Lus10006461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.