Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13130 598 / 0 Cellulase (glycosyl hydrolase family 5) protein (.1) AT3G26140 577 / 0 Cellulase (glycosyl hydrolase family 5) protein (.1) AT3G26130 573 / 0 Cellulase (glycosyl hydrolase family 5) protein (.1) AT5G17500 532 / 0 Glycosyl hydrolase superfamily protein (.1) AT5G16700 461 / 4e-158 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011404 [exp] 1112 / 0 AT1G13130 605 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10011403 [exp] 703 / 0 AT1G13130 610 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10006461 [exp] 695 / 0 AT1G13130 612 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10024686 [exp] 352 / 1e-114 AT3G26140 364 / 4e-120 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10032312 [exp] 291 / 5e-92 AT3G26140 298 / 2e-95 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10005737 [exp] 59 / 8e-11 AT3G26130 66 / 2e-14 Cellulase (glycosyl hydrolase family 5) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G183400 [exp] 727 / 0 AT1G13130 676 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Potri.010G049700 [exp] 702 / 0 AT1G13130 679 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Potri.010G049800 [exp] 558 / 0 AT1G13130 544 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Potri.001G097901 [exp] 375 / 6e-124 AT1G13130 393 / 2e-131 Cellulase (glycosyl hydrolase family 5) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00150 [flax] [poplar] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Lus10006462 pacid=23171990 polypeptide=Lus10006462 locus=Lus10006462.g ID=Lus10006462.BGIv1.0 annot-version=v1.0 ATGGCGAAGAATCAGCTGAGAAATCACTCCTTAGTCGTCTCCCTTCTCCTCATCTTCATCTCATCTTCATCAATCTCCCACATCCGAGAAGTCTCGGCAT TACCGCTCTCCACTGAATCACGGTGGATCGTCGACGAAGCCACCGGCCGGCGAGTCAAGCTCGCCTGCGTGAACTTGGCATCCCACCTGGAACCCATGGT GGCCGAAGGTCTTAACAGACTACCCATCAACGTGATCGCCCAGAAGATCACTTCGATGGGGTTCAATTGTGTCCGCCTCACTTGGCCGCTCTACTTGGTG ACCAACGCCACGCTGGGTTCCATCACCGTCCGGCAATCTTTCCGGCGGCTCCAGTTGCTTGAACCGATAAGAGGTATTCAGGCTCATAATCCTTGGATCA TCGACGTTTCGCTTCTGCAGGCGTTCAAGGAAGTGGTGAGGAAGCTTGGGGAAAACAATGTAATGGTGGTACTAGACAATCACGTAACGAAGCCAGGTTG GTGCTGCCGGGACTATGACGGCAATGGTTTCTTCGGGGATGAATACTTCAGCCCTGATTTATGGGTGGAAGGTCTGACTCGAATGGCCACCATGTTCAAA GGGTCTAGAAACGTGGTTGCAATGAGCTTGAGGAACGAGCTTCGTGGACCTAAACAGAACTCCAACGACTGGTACAGGTATATGACAAGAGGAGCTGAAG CAGTGCACACCGCGAACCCGGATGTTCTAGTGATTCTTTCGGGGCTGAACTACGATGGGGACTTGTCATTTCTAAACGTGGAGCCGGTGAAGTTGACGTT CAGCAAGAAGTTGGTGTTTGAGGTGCATTGGTACGGGTTCACGGATGGGGACGGGTGGAAGAATGGGAACCCGAACCAAGTGTGTGGACTTGTGATCGAT CATTTGAGGAAATCTGCAGGGTTTGTGTTGGATAAGGAGTATCCGTTGTTTGTGAGCGAGTTTGGGATTGATCAGAGTGGTGGGAATGTGAATGATGATC GGTTTATAAACTGCTTCCTTGGTTATGCAGCTGAGCTTGACTTGGATTGGGCAGTGTGGACTGTGGCTGGGAGTTACTATTTAGGGGAAGGTGTTGTTGG GATGAGTGAGCCTTATGGGTTGCTGAATTCGGATTGGGTTGAGATTCGGAACACTGCGTTCTTGGAGAAGCTTTCTGCACTTCAGAGACCTTTCCAAGGA CCAGGTCTGGAAGAGGTGAAGCTCCACAAGGTGATATTCCACCCATCAACAGGGCTATGTGTCCACAGAGGCAGAACAGATTCCGAACCTTTAAAGTTAG GACCTTGCTCGAGGTCCGATCCCTGGAGCTACGATAAGAAGACCTTATCAGTAATGGGAACACATCTATGCTTGATGGCTCAGCAGCTATCCAAGCCTGC ACAGATCCAGCTAGAGTACTGTCCTACGTGGGAGATGATCACAGACTCCGGAATGCACCTCTCGAGCAAGCTGCAGGACGGGACACCGGTCTGCTTAGAT GTGGACTCGAACAACAACAGCGACATTGTCACAAGCCCTTGCAAGTGTCTGAAAGCAGAAGATACAAAGTGTGACCCTGGAAGCCAGTGGTTCAAGTTGG TTGACAGCACAAGGAGAGGTAATGGGAAAGGTTTGCCGTCGGGGACCAATCGGTTGACTCGTGGTGGGTTCTCTTCGGGGAGGAGTTTGCTGTGGGAGTT CTTGAGCTTGGCCTTGGCTTGA
AA sequence Show only first row Show all	>Lus10006462 pacid=23171990 polypeptide=Lus10006462 locus=Lus10006462.g ID=Lus10006462.BGIv1.0 annot-version=v1.0 MAKNQLRNHSLVVSLLLIFISSSSISHIREVSALPLSTESRWIVDEATGRRVKLACVNLASHLEPMVAEGLNRLPINVIAQKITSMGFNCVRLTWPLYLV TNATLGSITVRQSFRRLQLLEPIRGIQAHNPWIIDVSLLQAFKEVVRKLGENNVMVVLDNHVTKPGWCCRDYDGNGFFGDEYFSPDLWVEGLTRMATMFK GSRNVVAMSLRNELRGPKQNSNDWYRYMTRGAEAVHTANPDVLVILSGLNYDGDLSFLNVEPVKLTFSKKLVFEVHWYGFTDGDGWKNGNPNQVCGLVID HLRKSAGFVLDKEYPLFVSEFGIDQSGGNVNDDRFINCFLGYAAELDLDWAVWTVAGSYYLGEGVVGMSEPYGLLNSDWVEIRNTAFLEKLSALQRPFQG PGLEEVKLHKVIFHPSTGLCVHRGRTDSEPLKLGPCSRSDPWSYDKKTLSVMGTHLCLMAQQLSKPAQIQLEYCPTWEMITDSGMHLSSKLQDGTPVCLD VDSNNNSDIVTSPCKCLKAEDTKCDPGSQWFKLVDSTRRGNGKGLPSGTNRLTRGGFSSGRSLLWEFLSLALA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10006462 [exp]	0	1
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011404 [exp]	1.0	0.9356
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10007272 [exp]	1.4	0.9329
AT4G15960			alpha/beta-Hydrolases superfam...		Lus10038649 [exp]	2.4	0.8910
AT3G63110		ATIPT3	isopentenyltransferase 3 (.1)		Lus10012372 [exp]	4.0	0.8748
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10023843 [exp]	6.1	0.8173
AT2G19580		TET2	tetraspanin2 (.1)		Lus10040551 [exp]	9.9	0.8518
AT5G25280			serine-rich protein-related (....		Lus10038100 [exp]	10.9	0.8657
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10007930 [exp]	13.0	0.8582
AT1G11570		NTL	NTF2-like (.1.2)		Lus10020061 [exp]	14.8	0.8734
AT3G21690			MATE efflux family protein (.1...		Lus10039675 [exp]	15.9	0.8540

Compare expression of checked genes

Lus10006462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.