Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26350 204 / 1e-61 unknown protein AT1G13050 175 / 5e-51 unknown protein AT4G26490 153 / 3e-43 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G56050 137 / 6e-37 unknown protein AT4G05220 68 / 6e-13 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G27080 64 / 3e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT5G06320 61 / 2e-10 NHL3 NDR1/HIN1-like 3 (.1) AT4G01410 61 / 2e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G61760 59 / 6e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G53730 58 / 2e-09 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011406 [exp] 569 / 0 AT3G26350 209 / 5e-60 unknown protein Lus10015606 [exp] 139 / 9e-38 AT4G26490 221 / 1e-71 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032906 [exp] 137 / 4e-37 AT4G26490 218 / 1e-70 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006754 [exp] 61 / 2e-10 AT4G05220 263 / 3e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10037259 [exp] 59 / 7e-10 AT5G45320 182 / 2e-58 unknown protein Lus10020066 [exp] 57 / 5e-09 AT4G05220 261 / 6e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015622 [exp] 53 / 1e-07 AT1G17620 196 / 5e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10034175 [exp] 52 / 2e-07 AT3G44220 210 / 7e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021287 [exp] 49 / 3e-06 AT2G35980 236 / 7e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G049000 [exp] 288 / 8e-94 AT3G26350 189 / 1e-56 unknown protein Potri.011G165500 [exp] 172 / 1e-50 AT4G26490 275 / 3e-93 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G468400 [exp] 164 / 1e-47 AT4G26490 265 / 5e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.008G184500 [exp] 91 / 1e-20 AT1G13050 53 / 3e-08 unknown protein Potri.004G234500 [exp] 76 / 1e-15 AT5G45320 173 / 7e-55 unknown protein Potri.003G046000 [exp] 72 / 1e-14 AT5G45320 164 / 3e-51 unknown protein Potri.003G039400 [exp] 60 / 8e-10 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G200700 [exp] 59 / 1e-09 AT1G17620 168 / 2e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G027400 [exp] 56 / 6e-09 AT4G05220 264 / 8e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.014G106100 [exp] 54 / 3e-08 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10006464 pacid=23171981 polypeptide=Lus10006464 locus=Lus10006464.g ID=Lus10006464.BGIv1.0 annot-version=v1.0 ATGTCCCGCCACCCCGAAACCAACCCTCACTTCGAAAGACCGTTACAACAACCCCACAGTAGCAACCGCGATCGTGACCACCGTGGTCATGATCGCGGTC GCAATCACCGATCTTCCCCTCCGCCTGTCAATAGGGGTGGTGGGGAAACAACTCCACATCCGCACCACCAACATCAACATCATCATCATCAACCAGATGC TCCTCACCACCGTCGTGATCGTGATCGAGACCTAGGCAGACGGTCTACGCCTCCACGAACGCCAGTGCCGATCGGTATTTCTCCGAACACTTCACTACCA CATCACCACCACCACCACCACCCGGAAGATGCTCCTCCTCACCATGATAATAGTGAACACTTCCCTCTCCACATCCAACCACGGCATCAAGATGAAAGCC GGCCCGAACCATTAGGTCCGGATAGACCGAAACAAGGCGGTCACTTCCAAAGCCCATGGGCCATCCCACCTCCCCGTCCACGTCCAGCCCACCACCCAGA CGGCCACTACCAAAGCCCGTGGATCCCTCCGCCGTCAGCTCATCCCGCCGACGATCGACCACTCGTCACCCATCCCCACCGCCACGACACGGCAGAGCAA CCTCAACCTCACCAACAACAACCCACAGGTAAACATCCACGTCAGCATCGCGACGGTCGGAAGCACCACCGTCCAACTCCCCCGCCGTCATCCGGCGGCG GCCACGATCCATCCCCAACATCTGGCGGCGGGAACCACCGCCGCCACGGTCGAGGACCGGTGGTTCCCTCGCCACGGAAGACCAAAATCTCGACGTGGTT CGCCGCCGTCTGCTGCGCAATCTTCTGGATCGCGATCTTCCTCGCCGGAATCATAATCCTCGTCGTCTACCTAATCTACCGCCCGCACAACCCGCGATTC GAAGTCTCCGACGCGACCCTCAACACGGCGTACCTCGATGCCGGCTCCCTACTAAACGCCGACGTATCCCTGCTGGCGAATTTCACCAACCCAAATCGAA AAGTCACCATCGATTTCGGGAGCCTGATCGTCGATCTGTACTACGGGACCACCCTGATCGCGACCCAGTTCATACAGCCGTTCTCGGCGGAGAAAGCCGG GTCGAGATTTGTGAATTTGGAGCTGGTGACCAGCCAGGTGAGGATTCCATTGGAGGAGAGCAAAAAGCTTGAAGAAGAGATAAATAAAAATACGGTGACT TTTAATGTGAAGGGTGTTTTCAGGGTTCGATCCCAGCTGGGGAGTTTTTTGGCTTACTCGTATAAGCTCTATGGGCATTGCACGATTGTGCTGACGGGGC CGCCAAGTGGCGTCCTACGTGGACGGCGGTGCATAACGAAACGATGA
AA sequence Show only first row Show all	>Lus10006464 pacid=23171981 polypeptide=Lus10006464 locus=Lus10006464.g ID=Lus10006464.BGIv1.0 annot-version=v1.0 MSRHPETNPHFERPLQQPHSSNRDRDHRGHDRGRNHRSSPPPVNRGGGETTPHPHHQHQHHHHQPDAPHHRRDRDRDLGRRSTPPRTPVPIGISPNTSLP HHHHHHHPEDAPPHHDNSEHFPLHIQPRHQDESRPEPLGPDRPKQGGHFQSPWAIPPPRPRPAHHPDGHYQSPWIPPPSAHPADDRPLVTHPHRHDTAEQ PQPHQQQPTGKHPRQHRDGRKHHRPTPPPSSGGGHDPSPTSGGGNHRRHGRGPVVPSPRKTKISTWFAAVCCAIFWIAIFLAGIIILVVYLIYRPHNPRF EVSDATLNTAYLDAGSLLNADVSLLANFTNPNRKVTIDFGSLIVDLYYGTTLIATQFIQPFSAEKAGSRFVNLELVTSQVRIPLEESKKLEEEINKNTVT FNVKGVFRVRSQLGSFLAYSYKLYGHCTIVLTGPPSGVLRGRRCITKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26350			unknown protein		Lus10006464 [exp]	0	1
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10022141 [exp]	1.4	0.9501
AT3G20650			mRNA capping enzyme family pro...		Lus10003803 [exp]	2.4	0.9527
AT2G46630			unknown protein		Lus10030217 [exp]	4.5	0.9443
AT1G23530			unknown protein		Lus10013015 [exp]	5.2	0.9202
AT4G18340			Glycosyl hydrolase superfamily...		Lus10028122 [exp]	5.5	0.9447
AT2G46630			unknown protein		Lus10005994 [exp]	5.7	0.9203
AT3G20650			mRNA capping enzyme family pro...		Lus10010478 [exp]	8.4	0.9198
AT4G01410			Late embryogenesis abundant (L...		Lus10030193 [exp]	9.4	0.9186
AT2G01660		PDLP6	plasmodesmata-located protein ...		Lus10016710 [exp]	9.5	0.9260
AT1G14730			Cytochrome b561/ferric reducta...		Lus10031935 [exp]	9.5	0.9308

Compare expression of checked genes

Lus10006464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.