Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13030 89 / 1e-19 sphere organelles protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011406 [exp] 133 / 8e-35 AT3G26350 209 / 5e-60 unknown protein Lus10006228 [exp] 127 / 7e-33 AT1G13030 320 / 4e-101 sphere organelles protein-related (.1) Lus10036876 [exp] 119 / 5e-30 AT1G13030 323 / 4e-102 sphere organelles protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G185100 [exp] 104 / 4e-25 AT1G13030 199 / 1e-55 sphere organelles protein-related (.1) Potri.010G048700 [exp] 101 / 4e-24 AT1G13030 194 / 1e-53 sphere organelles protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006465 pacid=23171964 polypeptide=Lus10006465 locus=Lus10006465.g ID=Lus10006465.BGIv1.0 annot-version=v1.0 ATGGAGAAAGTGAGGCTCCGTTTATCGTTCCACGAGTCACTGAAAATCTCCGACGGGTTCAAACGCTTCTGGGTCGTCCTAAAACCCCACTACAGAACCA TCTCCGACTTCTGCAATTACCTCCTCGACGTCTTCCAGCTTCGCAATTCATGCCCGGAAGGGCTTCTCCTCTCAATGGAAGGGTTCTTTCTACCGCCTTT TGAGTCGATTCGTTTGTTCAAGGACAGAGATTTGGTCCCAGTGAAGAGGAAAGAGAAGGGTGATCTGGGAATGATGTTGGAGTTTGTGGGGAATCTTCTA CTGGAGAATCAAGAGTTTGAGAAGGTTAAGGAAGTGAAGAATGTTTTGAAGAAGAGGAAAGCAATAGAGGAAGTTGGGAGCAGCTCAAAGAAGAAGAAGA AGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGGAGAAGGAGAGATCTTCTGGTGCTGAGAAATGTGCTGCAGCTGGTGATCGAAAGGCGGAAAATGC TTCGAGTTTGATTGATGGTGATAAGAAAGATGAGGAAGATGATCCCGAGGATAGTGAAATCTACCGAAATGTGACCAAGTCAACTGAACCTAACTCAGAC ATTAATGGTCACTTGGGTGTATCCTGTACGCCTTCCGAAACTACAAAGAACGAAGAGAATCAACGTACCATCGGAACGAGAATAGCAGGAGGAGTATCGC AGGAGGAGTATGATTGGGATATAAGTGAGAGTTCCGGCAGAGACCAAAGGACATTGAAGGCCTTGAGACGCAGTGCATTAGGTCTAACAATGGGTTTGTT GAGATCACAAAATGAGATATGA
AA sequence Show only first row Show all	>Lus10006465 pacid=23171964 polypeptide=Lus10006465 locus=Lus10006465.g ID=Lus10006465.BGIv1.0 annot-version=v1.0 MEKVRLRLSFHESLKISDGFKRFWVVLKPHYRTISDFCNYLLDVFQLRNSCPEGLLLSMEGFFLPPFESIRLFKDRDLVPVKRKEKGDLGMMLEFVGNLL LENQEFEKVKEVKNVLKKRKAIEEVGSSSKKKKKKKKKKKKKKEKEKERSSGAEKCAAAGDRKAENASSLIDGDKKDEEDDPEDSEIYRNVTKSTEPNSD INGHLGVSCTPSETTKNEENQRTIGTRIAGGVSQEEYDWDISESSGRDQRTLKALRRSALGLTMGLLRSQNEI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13030			sphere organelles protein-rela...		Lus10006465 [exp]	0	1
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10028440 [exp]	2.8	0.8576
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10034380 [exp]	3.2	0.8406
AT5G19960			RNA-binding (RRM/RBD/RNP motif...		Lus10017757 [exp]	3.7	0.8703
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10013219 [exp]	7.1	0.8611
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	7.7	0.8760
					Lus10040805 [exp]	8.5	0.8025
AT3G04550			unknown protein		Lus10032342 [exp]	12.3	0.7254
AT1G53600			Tetratricopeptide repeat (TPR)...		Lus10042207 [exp]	16.7	0.8155
AT2G28230			TATA-binding related factor (T...		Lus10030654 [exp]	20.2	0.8223
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003074 [exp]	20.5	0.8098

Compare expression of checked genes

Lus10006465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.