Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26380 455 / 3e-156 Melibiase family protein (.1) AT5G08380 64 / 8e-11 ATAGAL1 alpha-galactosidase 1 (.1) AT5G08370 62 / 3e-10 ATAGAL2 alpha-galactosidase 2 (.1.2) AT3G56310 58 / 5e-09 Melibiase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011407 [exp] 525 / 0 AT3G26380 476 / 3e-163 Melibiase family protein (.1) Lus10006226 [exp] 447 / 3e-153 AT3G26380 753 / 0.0 Melibiase family protein (.1) Lus10036875 [exp] 446 / 1e-146 AT3G26370 935 / 0.0 O-fucosyltransferase family protein (.1) Lus10036176 [exp] 69 / 1e-12 AT5G08370 521 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038325 [exp] 69 / 1e-12 AT5G08370 558 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038305 [exp] 69 / 2e-12 AT5G08370 490 / 1e-173 alpha-galactosidase 2 (.1.2) Lus10024401 [exp] 67 / 5e-12 AT5G08370 587 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018258 [exp] 64 / 6e-11 AT5G08370 553 / 0.0 alpha-galactosidase 2 (.1.2) Lus10034218 [exp] 61 / 6e-10 AT3G56310 646 / 0.0 Melibiase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G048400 [exp] 436 / 6e-150 AT3G26380 772 / 0.0 Melibiase family protein (.1) Potri.008G185300 [exp] 435 / 2e-148 AT3G26380 830 / 0.0 Melibiase family protein (.1) Potri.010G048300 [exp] 407 / 2e-137 AT3G26380 815 / 0.0 Melibiase family protein (.1) Potri.010G118200 [exp] 69 / 2e-12 AT5G08370 598 / 0.0 alpha-galactosidase 2 (.1.2) Potri.004G038100 [exp] 67 / 5e-12 AT5G08370 522 / 0.0 alpha-galactosidase 2 (.1.2) Potri.018G152200 [exp] 65 / 3e-11 AT5G08370 603 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G255200 [exp] 62 / 2e-10 AT5G08380 667 / 0.0 alpha-galactosidase 1 (.1) Potri.019G056700 [exp] 60 / 1e-09 AT3G56310 681 / 0.0 Melibiase family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006467 pacid=23171999 polypeptide=Lus10006467 locus=Lus10006467.g ID=Lus10006467.BGIv1.0 annot-version=v1.0 ATGAGTGTGTTCAACATGGACAACATGACCGTTCATTGTGACTGTGACCGTCGCCATCGGTTCCTTAGCATCAAACAAAATGGGACTTCAATAATGCAAA TGCCCTCACTAGCTAGCCCTAATTTCGAGATTGGCATCGGGCAATTAGCCTTCCGAGATCATCATAAGAAGCTGAAAACTAATGATCATGGTGGAGCAAT CCTACCACCAAGAGGATGGAACTCTTATGGCTCCTTCTGCTTTACAATCTCTGAAGAAGAGTTCTTGCAAAGTGCTTCAGTCATCTCTCACGCCTCCTTC CCCGTGGATACGAGGAAGTTGGAGCCGGGAGCTTCGACCAACTCGAGAGGGTTCGATGTGATCGATGAATGGGGAAGAGTGGTTCTGGATCCTGGTCGAT GGCCTTCGTCGGAAGGAGGTAAAGGGTTTGGTAAAGTGAGTGAGATGGTTCATTCCATGGGGCTCAAGTTTGGGATACACATCATGAGAGGAATAAGTGT TCAAGCTTATGATGACAACTCACTAATCTTGGATATTTCCAAGGGCGCTGCTTACGAAGAAGATGGCAGGAAATGGACGGAACAAGACATCGTGATCAAG GAGAAAGTCTGTGGATGGATGCCAGAAGGATTCATGAGTGTCAACAATAGCTTGGGAGCTGCTAAGGCCTTCTTGAAATCGATCCATCACCAGTATGCTT CAGAATGGAACATAGACTCCATAAACCATGACTGTGTCTTTGGAGATAACCTGAGTGTAGATGAGATAACAATCGTCTCAGATATTCTGAAACAAGCGGA TCATCCGGTTACATATTCTCTTTCGCCCGGGACCTCAGTGACTCCATCCATGGCTAAACAGATCAGTGGTTTGGCTAATATGTACAGAATAACTGCAGAT GATTGGGACAGCTGGAAGGATGGATTTCGCTGTGGCTCCGGGTTACAAGGCAAGTCATGGCCTGACTTGGACATGCGGCCATTAGGATGGCTCACTGATG CCGACTCGAATGTCAGACCACACAGGCAGTCTTGGCTCACTCTAGATGAGCAGAGAACTCAGATGACACTATGGTCGATGGCGAAATCCCCTCTGATGTT TGGAGGGGATGTTCGAAATCTCGACAATGCGACATTTGACATCATCACCAACCCGACTCTGCTCAAAATCGACCGTTCCAGCTCCAACAACTCCGAGGCA ATGTACCTTCATAAGTCATGA
AA sequence Show only first row Show all	>Lus10006467 pacid=23171999 polypeptide=Lus10006467 locus=Lus10006467.g ID=Lus10006467.BGIv1.0 annot-version=v1.0 MSVFNMDNMTVHCDCDRRHRFLSIKQNGTSIMQMPSLASPNFEIGIGQLAFRDHHKKLKTNDHGGAILPPRGWNSYGSFCFTISEEEFLQSASVISHASF PVDTRKLEPGASTNSRGFDVIDEWGRVVLDPGRWPSSEGGKGFGKVSEMVHSMGLKFGIHIMRGISVQAYDDNSLILDISKGAAYEEDGRKWTEQDIVIK EKVCGWMPEGFMSVNNSLGAAKAFLKSIHHQYASEWNIDSINHDCVFGDNLSVDEITIVSDILKQADHPVTYSLSPGTSVTPSMAKQISGLANMYRITAD DWDSWKDGFRCGSGLQGKSWPDLDMRPLGWLTDADSNVRPHRQSWLTLDEQRTQMTLWSMAKSPLMFGGDVRNLDNATFDIITNPTLLKIDRSSSNNSEA MYLHKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26380			Melibiase family protein (.1)		Lus10006467 [exp]	0	1
AT1G47710			Serine protease inhibitor (SER...		Lus10005089 [exp]	3.7	0.9712
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	4.2	0.9711
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10016537 [exp]	5.7	0.9585
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10006461 [exp]	6.9	0.9648
AT3G18750		ZIK5, WNK6, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10005983 [exp]	7.5	0.9527
AT4G35110			Arabidopsis phospholipase-like...		Lus10026277 [exp]	7.7	0.9586
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	7.9	0.9711
AT5G47720			Thiolase family protein (.1.2....		Lus10039109 [exp]	8.1	0.9704
AT3G03720		CAT4	cationic amino acid transporte...		Lus10005687 [exp]	8.5	0.9608
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10035260 [exp]	8.8	0.9597

Compare expression of checked genes

Lus10006467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.