Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67810 171 / 1e-52 SUFE2 sulfur E2 (.1) AT5G50210 125 / 1e-32 SUFE3, OLD5, QS SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) AT4G26500 65 / 4e-12 SUFE1, EMB1374, CPSUFE, ATSUFE SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011408 [exp] 333 / 2e-116 AT1G67810 167 / 3e-51 sulfur E2 (.1) Lus10043314 [exp] 149 / 5e-41 AT5G50210 1020 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Lus10019464 [exp] 147 / 2e-40 AT5G50210 1016 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Lus10032905 [exp] 71 / 7e-14 AT4G26500 380 / 4e-131 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10015605 [exp] 69 / 2e-13 AT4G26500 387 / 2e-133 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G089500 [exp] 145 / 1e-41 AT5G50210 401 / 1e-134 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Potri.015G085300 [exp] 150 / 2e-41 AT5G50210 989 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Potri.001G468300 [exp] 70 / 9e-14 AT4G26500 392 / 5e-136 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Potri.011G165400 [exp] 70 / 1e-13 AT4G26500 404 / 1e-140 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0233 [flax] [poplar] SufE_NifU PF02657 [flax] [poplar] SufE Fe-S metabolism associated domain
Representative CDS sequence Show only first row Show all	>Lus10006468 pacid=23171978 polypeptide=Lus10006468 locus=Lus10006468.g ID=Lus10006468.BGIv1.0 annot-version=v1.0 ATGAACTCCTCTACCGCCGTCTCCTTCCATCCTCCCAATCTCTCCCCCTCCTTCACGAATCATAAATCCAGCATAAACACATCCCACCTCCACCGCCACG GTTTCATACCCAGATCGCGAATCCGGCCGATTTCATCTCTCGAACGGAGCTTCCCGCCGCCGCCTCCGGCGGCGAGGGAGAAAAAACCGGACCTTTCCGT CCATTTTGCCACGAGCGAGTGTCCTCCGGCGTTGGCGGCTTCGGACGTCGGCGATCGGGTCCAGATCCTGGTGGCGGAGTTCGCGGCGCTGAAGGAGCCG CTGGACCGGGTCAAGCGGCTGCTGGACTACGCAGGTCGGGTCCCGCCGTTCCACGAGTCGGACCGGGTGGAGGCAAATCGGGTCACCGGGTGTACGACCC AGGTTTGGCTGGAGGTTCGGTTGGATGAATTGGGGAAAGCGAGGTTTAGGGCAGACAGCGATTCGGAGATCACGAAAGGGTTCGTTTCGTGCTTGGTTTG GCTGCTCGACGGGGCGTTTCCGGAGGATGTGGCTGCGGTGGAGGCGGAGGATTTGGAGGCGATGAACGTCGGGTTCAACAGGAAGGCTCCGTCGAGGGTG AAGACTTGGCAGAATGTGTTGGATAGTATGCAAAAGAGGGCTTTGGATTTGAAGGGAAATTGTCACGCCGGCCGCCGGAAGATTAACTTGTCACGGCGGT GGCGCTCGCCGGAAGTCTACCCCCGGCTAAGGTGA
AA sequence Show only first row Show all	>Lus10006468 pacid=23171978 polypeptide=Lus10006468 locus=Lus10006468.g ID=Lus10006468.BGIv1.0 annot-version=v1.0 MNSSTAVSFHPPNLSPSFTNHKSSINTSHLHRHGFIPRSRIRPISSLERSFPPPPPAAREKKPDLSVHFATSECPPALAASDVGDRVQILVAEFAALKEP LDRVKRLLDYAGRVPPFHESDRVEANRVTGCTTQVWLEVRLDELGKARFRADSDSEITKGFVSCLVWLLDGAFPEDVAAVEAEDLEAMNVGFNRKAPSRV KTWQNVLDSMQKRALDLKGNCHAGRRKINLSRRWRSPEVYPRLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67810		SUFE2	sulfur E2 (.1)		Lus10006468 [exp]	0	1
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10013500 [exp]	4.4	0.9013
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10016603 [exp]	7.5	0.8758
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10017489 [exp]	8.2	0.8975
AT5G61820			unknown protein		Lus10003210 [exp]	9.6	0.8847
AT4G25030			unknown protein		Lus10041414 [exp]	16.2	0.8719
AT5G53850			haloacid dehalogenase-like hyd...		Lus10015966 [exp]	18.1	0.8815
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10017487 [exp]	18.5	0.8772
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10005992 [exp]	22.6	0.8575
AT1G12440			A20/AN1-like zinc finger famil...		Lus10028903 [exp]	22.8	0.8798
AT1G49050			Eukaryotic aspartyl protease f...		Lus10042982 [exp]	25.3	0.8593

Compare expression of checked genes

Lus10006468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.