Plant FIBer expression Database

Lus10006470 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67840 636 / 0 CSK chloroplast sensor kinase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011413
[exp]
1093 / 0 AT1G67840 644 / 0.0 chloroplast sensor kinase (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G047500
[exp]
702 / 0 AT1G67840 677 / 0.0 chloroplast sensor kinase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0025 His_Kinase_A PF02518 HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence
>Lus10006470 pacid=23171976 polypeptide=Lus10006470 locus=Lus10006470.g ID=Lus10006470.BGIv1.0 annot-version=v1.0
ATGATTCTCCTAGCCGCCGCTCCTCTCCACACTCCTCTCTCAGTCTCCAACCTCACCTCCACTTCCACCACAACCTCCACCGTAACCACCACCACTAGCC
TCCTTTCATGCTCCGCCAACTACCAAAAGCTCACTCCTCCTGCTCCTACAGCACTCTTATCCTCTTCATTCTCCTCCACTGCAACCCCATCATCTTCACC
GCCGGCCAGCAACAACCTCCGCCACGTGTCGCAATCGCCTCCTCCCGATGATGCAAACCACAAAATGGAGATGCAGATGGAGCCGTCAGCATCCGCGATC
GTCGCGGCGATCCAGCGAGGAAGTTCAAATACGGCTTCTGTAGAGTTCCAGCAGCGGATCGAGAAGGATCAGAAGGGAAAATCGATGCTCCCGAGCCCTG
ATTTCCATAGGCTTTGCGTCGAACAGCTGGATCTCTTCCGGAGAATTGTTCATCCCGAAGCTATTCTCTCGGTGTACGTTAGGCCAGCTGGGAGCTACGT
GATGGATCAATTGGAGCTACGGCGAGTAGTAGCTTCACATCCCGGAGCAGAATCCGATGAGGTTCTTGTGCTGACTGGAAACTTCCGCATTCCAACTGGA
TTGCGAGCTGCTGAAGCTGCACTCACTCGTAGACAGATAGAGTTTGTCTCTGAACCTAGCGCTGTAGTGTTCCCAATGGTGAAACACCCCTTTGTGGTTG
GATTCTTGGTGGCCGAGTTACCAAAAATGGAGATGAAAGCATCTGATCCTGTGCAAGGTGATGGATCATGTGGTGACTTGATGCATTTGCCTCCTTCTCT
GGAGGATTCATATGCTTCTTCCTCAGGGTTTGATAAACGAGTGGTGGGAAGCGAGAGTTGCGATGATCATGAGCTTCATTCCAGCATCCATAAGTTCTCG
TCTGACACCAGATTGAATGCTATCAATATCTCCCGATCGCTGGCTATGGCTTATGTTATGGACCAGAAAGCTATGTTGCTCCAGCACTCCTCGTGGCAAA
CCAATGTTAGAATGAGTAGCCTAGTTGAGCAGATACGTGGATCTCTTTCAAGCATTCGAACGTTATGTAAAATGTTGACTGTTCATGTGAAGAAGAGTGA
GATTCCTTACGACGTCGTTGAAGACATACTCGTACAGGGCGAGCATATAAGAGATACTCTCCAAGAACTCCAAGATGCTGTTTACATGACAAAGGCTAAT
ATAATGCGGTATAACGAAGAATCCTTGAAGAGAATCATCAGTTCAACGAATAAAGGTCCCGAGCGTGAAAGCTGCCAGTTACCTCAGAACTTACTCAGAG
ATTACAGCTCGAAGTTGCGAAGCTCCACCGAACCATTGTTCCCTCTTAGTTCCGGCCTGGACGACTTGGAGATGCCCATGCCGCCTCTTTCTCTAGGACC
ATTCGACACAGTTGGAATAAGACCGTGCACGGTATCCGAGGTGCTAACCGACATGGTTGAAGCAGCGAAGCCACTAGCTCGAATGCAGCAACGAGTTATC
GAGCTCAACGATCTCTCCCGACCCCTCCAAGTCACAGTGGAAGAACCGGCTCTACGACAGGGTCTAAGCAATCTAATCGAAGGAGCTCTACTTCGTACGC
AAACCGGTGGGAAAGTGGAGATCGTATCGACTCGAGCGCCAGCTGGAGGGGTGCTGGTAGTGATCGACGACGATGGCCCCGATATGCACTACATGACACA
GATGCATTCGCTGACACCGTTCGGGGCGGACCTTTTCTCGGAGGGCATGGTAGAGGACAACATGACGTGGAACTTCATCGCGGGGCTGACCGTTGCTCGA
GAGATTTTGGAGTCGTACGGCTGCGTTGTGCGAGTTATATCGCCTCGGTCGATGGATGCAGCGGTGGGCAGTGGCGGCACCCGGGTCGAGCTATGGCTTC
CTTCTTTGCCGGAAACTCCGAACTGA
AA sequence
>Lus10006470 pacid=23171976 polypeptide=Lus10006470 locus=Lus10006470.g ID=Lus10006470.BGIv1.0 annot-version=v1.0
MILLAAAPLHTPLSVSNLTSTSTTTSTVTTTTSLLSCSANYQKLTPPAPTALLSSSFSSTATPSSSPPASNNLRHVSQSPPPDDANHKMEMQMEPSASAI
VAAIQRGSSNTASVEFQQRIEKDQKGKSMLPSPDFHRLCVEQLDLFRRIVHPEAILSVYVRPAGSYVMDQLELRRVVASHPGAESDEVLVLTGNFRIPTG
LRAAEAALTRRQIEFVSEPSAVVFPMVKHPFVVGFLVAELPKMEMKASDPVQGDGSCGDLMHLPPSLEDSYASSSGFDKRVVGSESCDDHELHSSIHKFS
SDTRLNAINISRSLAMAYVMDQKAMLLQHSSWQTNVRMSSLVEQIRGSLSSIRTLCKMLTVHVKKSEIPYDVVEDILVQGEHIRDTLQELQDAVYMTKAN
IMRYNEESLKRIISSTNKGPERESCQLPQNLLRDYSSKLRSSTEPLFPLSSGLDDLEMPMPPLSLGPFDTVGIRPCTVSEVLTDMVEAAKPLARMQQRVI
ELNDLSRPLQVTVEEPALRQGLSNLIEGALLRTQTGGKVEIVSTRAPAGGVLVVIDDDGPDMHYMTQMHSLTPFGADLFSEGMVEDNMTWNFIAGLTVAR
EILESYGCVVRVISPRSMDAAVGSGGTRVELWLPSLPETPN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G67840 CSK chloroplast sensor kinase (.1.... Lus10006470
[exp]
0 1
AT3G19900 unknown protein Lus10029066
[exp]
2.6 0.8981
AT3G19490 ATNHD1 ARABIDOPSIS THALIANA NA/H ANTI... Lus10014094
[exp]
5.8 0.8917
AT1G67840 CSK chloroplast sensor kinase (.1.... Lus10011413
[exp]
8.4 0.8797
AT3G02830 C3HZnF ZFN1 zinc finger protein 1 (.1) Lus10026996
[exp]
14.3 0.8609
AT1G19640 JMT jasmonic acid carboxyl methylt... Lus10024271
[exp]
15.0 0.8556
AT3G27925 DEGP, DegP1, DE... DegP protease 1 (.1) Lus10008781
[exp]
15.0 0.8861
AT5G22620 phosphoglycerate/bisphosphogly... Lus10020553
[exp]
18.3 0.8805
AT1G07540 MYB TRFL2 TRF-like 2 (.1) Lus10010844
[exp]
19.0 0.8620
AT5G67030 NPQ2, LOS6, IBS... NON-PHOTOCHEMICAL QUENCHING 2,... Lus10009359
[exp]
20.6 0.8681
AT1G44575 CP22, PSBS, NPQ... PHOTOSYSTEM II SUBUNIT S, NONP... Lus10029680
[exp]
23.7 0.8792

Lus10006470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.