Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20300 734 / 0 Toc90 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) AT3G16620 483 / 2e-156 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) AT2G16640 482 / 3e-155 ATTOC132, TOC132 multimeric translocon complex in the outer envelope membrane 132 (.1) AT4G02510 469 / 6e-148 TOC86, TOC160, PPI2, ATTOC159, TOC159 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) AT5G05000 113 / 3e-27 ATTOC34, OEP34, TOC34 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34, translocon at the outer envelope membrane of chloroplasts 34 (.1.2.3) AT1G02280 108 / 1e-25 PPI1, ATTOC33, TOC33 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) AT4G15810 84 / 2e-16 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G09930 49 / 1e-05 Avirulence induced gene (AIG1) family protein (.1) AT4G09940 43 / 0.0006 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027712 [exp] 1375 / 0 AT5G20300 744 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10004619 [exp] 521 / 0 AT5G20300 239 / 3e-73 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10005063 [exp] 488 / 5e-156 AT3G16620 1204 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10006048 [exp] 465 / 6e-148 AT4G02510 1178 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10043414 [exp] 266 / 4e-79 AT4G02510 387 / 2e-119 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10027835 [exp] 262 / 5e-74 AT3G16620 645 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10034170 [exp] 255 / 4e-73 AT2G16640 374 / 1e-111 multimeric translocon complex in the outer envelope membrane 132 (.1) Lus10028706 [exp] 240 / 2e-67 AT4G02510 548 / 3e-175 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10028707 [exp] 182 / 2e-51 AT4G02510 498 / 2e-165 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G063500 [exp] 893 / 0 AT5G20300 865 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.018G123300 [exp] 839 / 0 AT5G20300 796 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.009G131300 [exp] 503 / 1e-163 AT3G16620 1111 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.004G171600 [exp] 491 / 5e-157 AT3G16620 1128 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.009G131200 [exp] 492 / 9e-157 AT3G16620 1129 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.010G014300 [exp] 440 / 2e-138 AT4G02510 812 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.008G224900 [exp] 434 / 4e-137 AT4G02510 847 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.008G225000 [exp] 424 / 2e-133 AT4G02510 790 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.014G109400 [exp] 108 / 8e-26 AT1G02280 422 / 4e-150 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) Potri.002G183400 [exp] 104 / 2e-24 AT1G02280 417 / 6e-148 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF04548 [flax] [poplar] AIG1 AIG1 family CL0023 [flax] [poplar] PF11886 [flax] [poplar] TOC159_MAD Translocase of chloroplast 159/132, membrane anchor domain
Representative CDS sequence Show only first row Show all	>Lus10006471 pacid=23171986 polypeptide=Lus10006471 locus=Lus10006471.g ID=Lus10006471.BGIv1.0 annot-version=v1.0 ATGCCATCCTTCTCCCTTGCAGATTTACCTGCTAATTCCGAGGCAGCCTCGGCTCCTGATGCCTCACCCCAGCAAGTGGTTGAAGCTTCTTCTCAACCAT CAACGCACCACATTAAAGAAAGAGACACACATCCATTGGAAAATGTTGAACATCTCAAAATCAACTTCTTCCGTCTTCTTCGACGATTTGGGTTGCCTAT GGAAAGTGCTCTTGTAGCAAAGGTTTTGTATAGGATACACATAGCAACTTCAATTCGAGGTGAGCTGCCCAAGAGAGTGCGAAATATTAACGCCAAAACT ATTGCTGCAGCTCAAGAGGGTTCCGGAGTACCTGAATTAAACTTCTCCGTTAGAATACTGGTGCTTGGCAAAACCGGAGTTGGGAAGAGTGCTACTATAA ACTCTATTCTTGATCAGAGAGCAACCATCACTAGTGCATTTCAGCCAGCCACTAACCGGGTACAAGAGGTTACAGGTACTCTTAATGGGGTTAGAGTAAC TTTTATAGACACCCCTGGTTTTTTGCCACATTCTGGCAGCGGTATTAGACAAAACCTGAAGATCATGCGTTCAGTGAAGCGATTCATTAGGAAATCCCCT CCAGACATTGTCTTGTTTGTTGAGCGCCTTGACCACTTGAATACGGGCTATAGCGACTTCCTCCTTCTGCAGCTAATGACGGATGTTTTTGGTGATGCTA TTTGGTTTAACACCATGATCATAATGACTCATGCTTCCTCTTCCCTGCCGGAAGGATCTACTGGAGGCCCGGTCAGCTACGAATCATACGTGTCTCGGTG TTCTCAGATGATGCAGCACTACATACACGAAGCAGTTTCAGATACTACACTCCAGAACCTTGTGGTTGTTGTTGAAAATCATCCTCAGTGTGAGAAAAAT AGTAATGGTGACGCTATTCTTCCTAATGGTCAGGTTTGGAGATCTCAGTTTTTACTCTTCTGCATATGCACTAAAGTACTTGGTGATGCAAGTAACATTT TGGAACTGAAAAACTGCGTTGAGTTAGGGCCAAAGACTCGACCGCAGGTGCTTTCTCTTCCCCGTTTACTTTCATGGCTTATAAAGAATAAGGCTGTGTC GGGTCCAACTCCAGACGGTCATGATTTGGACGAGATTGTAGTTGTAGATGAAGATGAAGAAGATGAGTACGATCAATTGCCACCAATCCGTATCCTGACA AAATCTCAGGTTGCAAAATTGAGCAAGTCTCAGAAAAATGACTACCTTGATGAGTTGGATTATCGAGAGATGGTTTACATGAAGAAACAGTTAAAAGAAG AGAGTCGAAGCCGAAGGGAGAATATGCTTTTCGGAAAGGCAAGTTATGAAGAGTTCGATAACTCCGAGGCCACCAATGCCTCCCCAGAGACGGTCCTGTT ACCTGATATGGCAGTTCCTCCAAGTTTCGACTCAGATTGCCCTGTGCATCGATACCGCTGCCTCGTAGCAATTGGCGACCAATTGCTGACGAGACCTGTC CTTGATCCTCGAGGATGGGATCATGATGTTGGTTTTGATACAGTAGACTTGGAGACGGCCATAGAAATGAAAAAGAACCTCTGTGCCTCCGTTTCGGGGC AGATCAACAAGGACAAGAACAACTTCAGTATTCAGTCAGAATGTGCAGTTACATATGCTGATCTGAAGGGACCTACTTATTCTGCAGGTCTAAATGTACA ATCGGCTGGGAAAGACCTGGTCTACACAATTCATGGCAACACAAGAAGTAAGATTTTCGCACATAATAATGTTGCCGACTGTGGGGTTTCTTTGACATCC TCTTGTCGCAAGTGCTATCTTGGTGCCAAGCTCGAAAATTCTGTATTGGTTGGCAAGAGACTAAAGTTACTGATCAATGGCGGACAAATGAGAGGGGCTG GGGAAGTTGCAAACGGCGGAAGTGTAGAAGCAACCATCCTAGGGACGGATTACCCTATGAGGAATGATAAGGCGAGCCTCTCATTGACTGCCTTATCCTT CAACAAGGAAACCGTGGTCAGCGGAGGAGTCGAGTCGGAGTTTCAACTGATACGAGGCACAAGAGTGGCTGTCAATGCAAATCTGAACTCCCTGAATATG GGTAAGGTTGGTATAAAGGTCAGTAGCTCTGAGCACCTTGAAATCGCTGTCATTGCCGCGCTCACGATATTCAGCGCCATTTTCCGCAAGAGAGTAGCGA ACACCAGCCCAGATGTGTCGGAGACAGGAGAATTTCCAGTTGTATCATAG
AA sequence Show only first row Show all	>Lus10006471 pacid=23171986 polypeptide=Lus10006471 locus=Lus10006471.g ID=Lus10006471.BGIv1.0 annot-version=v1.0 MPSFSLADLPANSEAASAPDASPQQVVEASSQPSTHHIKERDTHPLENVEHLKINFFRLLRRFGLPMESALVAKVLYRIHIATSIRGELPKRVRNINAKT IAAAQEGSGVPELNFSVRILVLGKTGVGKSATINSILDQRATITSAFQPATNRVQEVTGTLNGVRVTFIDTPGFLPHSGSGIRQNLKIMRSVKRFIRKSP PDIVLFVERLDHLNTGYSDFLLLQLMTDVFGDAIWFNTMIIMTHASSSLPEGSTGGPVSYESYVSRCSQMMQHYIHEAVSDTTLQNLVVVVENHPQCEKN SNGDAILPNGQVWRSQFLLFCICTKVLGDASNILELKNCVELGPKTRPQVLSLPRLLSWLIKNKAVSGPTPDGHDLDEIVVVDEDEEDEYDQLPPIRILT KSQVAKLSKSQKNDYLDELDYREMVYMKKQLKEESRSRRENMLFGKASYEEFDNSEATNASPETVLLPDMAVPPSFDSDCPVHRYRCLVAIGDQLLTRPV LDPRGWDHDVGFDTVDLETAIEMKKNLCASVSGQINKDKNNFSIQSECAVTYADLKGPTYSAGLNVQSAGKDLVYTIHGNTRSKIFAHNNVADCGVSLTS SCRKCYLGAKLENSVLVGKRLKLLINGGQMRGAGEVANGGSVEATILGTDYPMRNDKASLSLTALSFNKETVVSGGVESEFQLIRGTRVAVNANLNSLNM GKVGIKVSSSEHLEIAVIAALTIFSAIFRKRVANTSPDVSETGEFPVVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20300		Toc90	translocon at the outer envelo...		Lus10006471 [exp]	0	1
AT5G20300		Toc90	translocon at the outer envelo...		Lus10027712 [exp]	1.0	0.9358
AT5G07320		APC3	ATP/phosphate carrier 3, Mitoc...		Lus10032523 [exp]	2.8	0.8925
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10008983 [exp]	4.2	0.8949
AT5G22040			unknown protein		Lus10000457 [exp]	9.1	0.8317
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014548 [exp]	9.9	0.8932
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10017490 [exp]	11.0	0.8768
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10033706 [exp]	11.5	0.8480
AT4G38870			F-box and associated interacti...		Lus10003705 [exp]	11.6	0.8671
AT5G36930			Disease resistance protein (TI...		Lus10042165 [exp]	12.3	0.8674
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10036540 [exp]	15.9	0.8453

Compare expression of checked genes

Lus10006471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.