Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67850 565 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G08040 530 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT3G27470 525 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT2G28310 519 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) AT1G13000 512 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT3G26440 508 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) AT1G24570 478 / 3e-169 Protein of unknown function (DUF707) (.1) AT4G12840 278 / 9e-91 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT4G18530 259 / 3e-83 Protein of unknown function (DUF707) (.1) AT1G11170 259 / 1e-82 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011414 [exp] 714 / 0 AT1G67850 611 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10032090 [exp] 535 / 0 AT3G27470 564 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10021463 [exp] 517 / 0 AT2G28310 594 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10016095 [exp] 517 / 0 AT2G28310 604 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10003659 [exp] 516 / 0 AT3G27470 563 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10041316 [exp] 513 / 0 AT2G28310 590 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10022287 [exp] 496 / 1e-175 AT3G27470 548 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10037396 [exp] 517 / 3e-172 AT5G60700 1181 / 0.0 glycosyltransferase family protein 2 (.1) Lus10035229 [exp] 461 / 1e-163 AT1G67850 452 / 1e-159 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G185600 [exp] 600 / 0 AT1G67850 610 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.010G047200 [exp] 590 / 0 AT1G67850 581 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.017G065200 [exp] 560 / 0 AT3G27470 605 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.009G011000 [exp] 517 / 0 AT2G28310 608 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Potri.019G053000 [exp] 285 / 1e-93 AT4G18530 444 / 4e-156 Protein of unknown function (DUF707) (.1) Potri.014G175800 [exp] 271 / 2e-88 AT4G12840 482 / 1e-170 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.011G045300 [exp] 263 / 9e-85 AT1G61240 534 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.004G036800 [exp] 259 / 3e-83 AT1G61240 535 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.004G227700 [exp] 258 / 8e-83 AT4G18530 466 / 1e-164 Protein of unknown function (DUF707) (.1) Potri.003G003100 [exp] 256 / 3e-82 AT4G18530 480 / 4e-170 Protein of unknown function (DUF707) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05212 [flax] [poplar] DUF707 Protein of unknown function (DUF707)
Representative CDS sequence Show only first row Show all	>Lus10006472 pacid=23171958 polypeptide=Lus10006472 locus=Lus10006472.g ID=Lus10006472.BGIv1.0 annot-version=v1.0 ATGACATTCTTCGGGATAGTATTCGGATTCTCGATTGGAGTATCTTTCCCTTCATTATCTGTTTCGAAGCTGAATTTTGCATCTGGCCTTCTTCCAACCA TTGATTTGTCATATATGGGGGATAAAAAGCTGGGATTGTCCAGTCCTCCGAGCTCGAATAGCTCAACCAATAGTACTAGTGTCGGTAACTCTGCCAAATT GAACGATACGTCAAAGATATGGGTCCCTTCAAATCCTCGAGGTGCAGAAAGGTTGCCACCGGGAATCATTGAAGCCGAATCCGACTTCAATTTGCGTCGT TTGTGGGGGAAACCCAGCGAGGACTTGACCGAGAAACCAAAGTATCTCGTTACATTTACTGTTGGTTATAATCAGAGACGCAATATTGATGCATGTGTGA AGAAGTTCTCAGGGAACTTTATGATCCTGTTGTTTCACTACGACGGTAGAGTGTCGGAGTGGGACGAGTTTGAGTGGTCCAAGCGGGCTATTCATGTCAG CGCCCGGAAGCAGACGAAATGGTGGTATGCAAAGCGGTTTTTGCATCCGGATATCGTAGCATCGTATGATTATATTTTCATCTGGGACGAAGATCTAGGC GTTGAGCATTTCAATGCAGAAGAATACTTAAAGCTAGTTAAGAAACACGGGTTGGAGATCTCGCAACCCGGTCTGGATCCAAGTAAAGGCTTAACCTGGC AGATGACCAAGAGAAGAGGAGATCAAGAAGTTCACAAAACGACGACGGAGAAACCGGGTTGGTGCTCCGACCCTCATGTACCACCCTGTGCAGCTTTTGT TGAGATCATGGCTCCGGTATTCTCTCGAGATGCGTGGCGCTGCGTTTGGTACATGATTCAGAATGACTTGGTACATGGATGGGGTCTTGACTTCGCTCTT AGGAAATGCGTAGAGCCTGCCCATGAGAAGATTGGAGTTGTAGATTCTCAATGGATTGTTCATCAAGGTGTCCCTTCACTCGGAAACCAGGGCGAAACGA AGAATGGAAGGCCGCCATGGCAAGGGGTGAGGGAGAGATGCAGGAAGGAATGGACCATGTTTCAGAACCGAGTAGCGATCGCGGAGAACGATTACTTCAA GAAGCTGGGAATCGGTCAGTCGAATTCGAGTGCACATTGA
AA sequence Show only first row Show all	>Lus10006472 pacid=23171958 polypeptide=Lus10006472 locus=Lus10006472.g ID=Lus10006472.BGIv1.0 annot-version=v1.0 MTFFGIVFGFSIGVSFPSLSVSKLNFASGLLPTIDLSYMGDKKLGLSSPPSSNSSTNSTSVGNSAKLNDTSKIWVPSNPRGAERLPPGIIEAESDFNLRR LWGKPSEDLTEKPKYLVTFTVGYNQRRNIDACVKKFSGNFMILLFHYDGRVSEWDEFEWSKRAIHVSARKQTKWWYAKRFLHPDIVASYDYIFIWDEDLG VEHFNAEEYLKLVKKHGLEISQPGLDPSKGLTWQMTKRRGDQEVHKTTTEKPGWCSDPHVPPCAAFVEIMAPVFSRDAWRCVWYMIQNDLVHGWGLDFAL RKCVEPAHEKIGVVDSQWIVHQGVPSLGNQGETKNGRPPWQGVRERCRKEWTMFQNRVAIAENDYFKKLGIGQSNSSAH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67850			Protein of unknown function (D...		Lus10006472 [exp]	0	1
AT4G31810			ATP-dependent caseinolytic (Cl...		Lus10042883 [exp]	4.5	0.8590
AT4G04470		PMP22	Peroxisomal membrane 22 kDa (M...		Lus10020027 [exp]	4.9	0.8972
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10020182 [exp]	5.7	0.8462
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10026817 [exp]	8.0	0.8864
AT2G36900		ATMEMB11, MEMB1...	membrin 11 (.1.2)		Lus10005690 [exp]	8.5	0.8680
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10012702 [exp]	8.8	0.8736
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10000954 [exp]	10.2	0.8776
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039428 [exp]	10.2	0.8749
AT4G32272			Nucleotide/sugar transporter f...		Lus10038090 [exp]	10.4	0.8450
AT1G04555			unknown protein		Lus10023715 [exp]	11.4	0.8792

Compare expression of checked genes

Lus10006472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.