Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12990 654 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT1G67880 642 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT3G27540 610 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT5G14480 603 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT3G01620 570 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT2G13290 421 / 8e-147 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) AT3G26445 120 / 9e-33 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006474 [exp] 791 / 0 AT1G12990 657 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10035231 [exp] 625 / 0 AT3G27540 672 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10032088 [exp] 623 / 0 AT3G27540 676 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10022281 [exp] 617 / 0 AT3G27540 675 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10003666 [exp] 614 / 0 AT3G27540 670 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10019400 [exp] 442 / 9e-155 AT2G13290 538 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Lus10043257 [exp] 440 / 4e-154 AT2G13290 538 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Lus10038093 [exp] 427 / 9e-149 AT2G13290 533 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Lus10000322 [exp] 0 / 1 AT1G12990 63 / 4e-23 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G186000 [exp] 726 / 0 AT1G12990 691 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Potri.010G046900 [exp] 725 / 0 AT1G12990 675 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Potri.001G343600 [exp] 621 / 0 AT3G27540 627 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Potri.018G127900 [exp] 442 / 8e-155 AT2G13290 530 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Potri.006G066700 [exp] 436 / 1e-152 AT2G13290 526 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04724 [flax] [poplar] Glyco_transf_17 Glycosyltransferase family 17
Representative CDS sequence Show only first row Show all	>Lus10006475 pacid=23171961 polypeptide=Lus10006475 locus=Lus10006475.g ID=Lus10006475.BGIv1.0 annot-version=v1.0 ATGTGGTGGATGATGGGGGAGAATGGCGGCCATTACTGCTCCAAGAAGACAGATGATATCTGTGCCGATGTTTGTGGCCAGTTTCATTTCTCAAGCTGTA TAGAAAAATTTGAGCTTAAGGCTTTGGTTTATCTTGCTGATTGCTGTAGATTTGGTTTCTCAGATGCAAAGGATTCAGGAAGGGTGTTGAGCATGTCTCG AATCAAGTGCATTCTCCGCGGATTCGATTTGAAGACTTTGCTGTTCTTCTTCATTCTAGTCCCCACTGTTGTATATGGGGTTTACTTGCACGGCCAGAAG ATCTCCTACTTCTTACGGCCCCTATGGGAGTCGCCTCCCAAAGGATTCAACGAGATACCACATTACTACAATGAGAATGTCACGATGGAGAATCTGTGCA AGCTCCACGGATGGAAGATTCGTGAGTTCCCTAGGCGAGTCTATGATGCCGTGTTGTTCAGCAATGAGATGGACATCCTCACGATGCGGTGGAAGGAGCT CTACCCTTATGTTACACAGTTCATCCTCTTGGAATCGAATTCCACCTTCACTGGAACTGAGAAGCTTTTGTATTTTGCTAATCATAGAGAGCAGTTCAAG TTTGTTGAGCCTAGGTTGACATATGGCACCATTGGTGGGAGGTTCAAGAAGGGTGAGAATCCTTTTGTTGAGGAAGCGTACCAGCGAGTTGCTTTGGACC AGCTTATCAAAGTTGCAGGGATATCGGATGATGATCTGTTGATAATGTCGGATGTTGATGAGATTCCGAGTAGGAATACTATTGATCTCTTGAGATGGTG TGATGATATACCTCAGGTGCTTCATCTCCGGTTGAGGAACTATCTCTACTCGTTCGAGTTTCTCGTGGATAACAATAGTTGGAGGGCTTCTGTGCATAGG TACAAGATGGGGAAGACGAGGTATGCTCACTATCGACAGGCGGATGATATTCTGGCAGATGCCGGGTGGCATTGTAGCTTCTGCTTTCGTCGTGTGAGCG AGTTTGTGTTCAAGATGAAGGCTTATAGTCACTTTGACAGGGTGAGGTTCAAGCGTTACTTGGACCCCAAGAGAATCCAGAAGGTGATATGTAAAGGTTC GGACTTGTTCGATATGCTCCCCGAGGAGTATACTTTCAAGGAGATTATCGGAAAGATGGGACCGGTTCCTCATTCGTATTCGGCAGTGCATTTACCATCC TTTCTCTTGGAGAATGCTGATGACTACAAGTTCCTATTGCCTGGACATTGTTTGAGAGAAAGTGGGTGA
AA sequence Show only first row Show all	>Lus10006475 pacid=23171961 polypeptide=Lus10006475 locus=Lus10006475.g ID=Lus10006475.BGIv1.0 annot-version=v1.0 MWWMMGENGGHYCSKKTDDICADVCGQFHFSSCIEKFELKALVYLADCCRFGFSDAKDSGRVLSMSRIKCILRGFDLKTLLFFFILVPTVVYGVYLHGQK ISYFLRPLWESPPKGFNEIPHYYNENVTMENLCKLHGWKIREFPRRVYDAVLFSNEMDILTMRWKELYPYVTQFILLESNSTFTGTEKLLYFANHREQFK FVEPRLTYGTIGGRFKKGENPFVEEAYQRVALDQLIKVAGISDDDLLIMSDVDEIPSRNTIDLLRWCDDIPQVLHLRLRNYLYSFEFLVDNNSWRASVHR YKMGKTRYAHYRQADDILADAGWHCSFCFRRVSEFVFKMKAYSHFDRVRFKRYLDPKRIQKVICKGSDLFDMLPEEYTFKEIIGKMGPVPHSYSAVHLPS FLLENADDYKFLLPGHCLRESG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006475 [exp]	0	1
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006474 [exp]	1.0	0.9559
AT1G29530			unknown protein		Lus10011974 [exp]	1.4	0.8751
AT3G52720		CAH1, ATACA1, A...	A. THALIANA ALPHA CARBONIC ANH...		Lus10021356 [exp]	2.4	0.8157
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10001665 [exp]	2.4	0.8303
AT1G65295			unknown protein		Lus10026997 [exp]	2.8	0.8290
AT3G07460			Protein of unknown function, D...		Lus10038238 [exp]	3.2	0.7989
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10018674 [exp]	5.0	0.8176
AT5G28150			Plant protein of unknown funct...		Lus10042600 [exp]	5.7	0.7981
AT1G54380			spliceosome protein-related (....		Lus10025495 [exp]	6.2	0.7628
AT5G22930			Protein of unknown function (D...		Lus10037944 [exp]	7.7	0.7905

Compare expression of checked genes

Lus10006475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.