Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27040 407 / 4e-136 Major facilitator superfamily protein (.1.2) AT1G69850 397 / 6e-132 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT1G33440 377 / 1e-123 Major facilitator superfamily protein (.1) AT1G59740 370 / 6e-121 Major facilitator superfamily protein (.1) AT2G26690 350 / 2e-113 Major facilitator superfamily protein (.1) AT5G01180 342 / 9e-111 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT5G62730 342 / 2e-110 Major facilitator superfamily protein (.1) AT2G02040 340 / 1e-109 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G68570 330 / 1e-105 Major facilitator superfamily protein (.1) AT3G54140 321 / 1e-102 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032876 [exp] 1031 / 0 AT1G27040 445 / 1e-150 Major facilitator superfamily protein (.1.2) Lus10002793 [exp] 695 / 0 AT1G27040 418 / 7e-141 Major facilitator superfamily protein (.1.2) Lus10015240 [exp] 466 / 2e-158 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10005417 [exp] 460 / 4e-156 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10037217 [exp] 413 / 5e-138 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1) Lus10013276 [exp] 410 / 7e-137 AT1G69850 780 / 0.0 nitrate transporter 1:2 (.1) Lus10036710 [exp] 403 / 5e-134 AT1G69850 822 / 0.0 nitrate transporter 1:2 (.1) Lus10030799 [exp] 403 / 6e-134 AT1G69850 771 / 0.0 nitrate transporter 1:2 (.1) Lus10033101 [exp] 392 / 9e-130 AT5G62730 748 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G129500 [exp] 747 / 0 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.014G036200 [exp] 743 / 0 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.004G064100 [exp] 473 / 6e-161 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.001G272900 [exp] 464 / 2e-158 AT1G59740 407 / 1e-135 Major facilitator superfamily protein (.1) Potri.005G001400 [exp] 462 / 1e-156 AT1G59740 372 / 2e-121 Major facilitator superfamily protein (.1) Potri.010G034300 [exp] 408 / 4e-136 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.012G070700 [exp] 390 / 6e-129 AT1G69850 686 / 0.0 nitrate transporter 1:2 (.1) Potri.003G000800 [exp] 381 / 3e-125 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.004G229000 [exp] 374 / 2e-122 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.019G067500 [exp] 373 / 4e-122 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10006477 pacid=23142514 polypeptide=Lus10006477 locus=Lus10006477.g ID=Lus10006477.BGIv1.0 annot-version=v1.0 ATGGGAGCAGTGAAGAAGCCACGAGGCAAGCTCGGAGGAAACAGAGCCACCCTTTTTGTCTTCGCAATGGAAGGGCTGGAGAACATGGCGTTCGTGGCAA ACGCAGTAAGCCTGTTCACATACTTCTACGGATATATGAACTTCAGCATCACGAAATCAGCCACAACTCTGACCAACTTGATGGGAACTGCTTTCTTGCT CTCCCTCTTCGGTGGTTTCCTCTCCGACACCTGCCTCTCCAGATTCACCACTTGTGTCCTCTTCGGCACCTTCGAGTTATTGGGATACGGTCTTCTAGCG GTGCAAGCACACTTCAACCAACTAAGACCCACGCCGTGCAACGGAGCGGCTGCGCTAAACAACGCCAACCAATGCGAGGCCGCCAGCAGCGGTCAGTCGG CCATGCTCTACATCGGACTGTACCTAATAGCATTGGGAACCGGCGGTGTAAAGGCGGCTCTTCCTGCATTGGGGGCCGACCAGTTTGACACGAGGAACCT AAAGGAAGCCCCTAAGCTGTCAAGCTTCTTCAATTGGTTCCTTTTCAGCTTGACTGCTGGAGCCATAATTGGGGTCACGTTTGTGGTGTGGATAAGCGCT AACCAAGGTTGGGACTGGGGGTTTGGACTCAGTGGCCTTGCTGTTTTGTTTGCCGTTGTCTTTGTTTCCATGGGGAAGTCTATTTATCGCATGAATTCTC CTTCTGGGAGTCCCTTTGTTCGCTTCGCTCAGGTATTTGTGGCTGCAATTAGAAACAGAAATCTTCCAACGCCAAAGGCTGAGGATGAGCTCTACGAGAT TCGAGAGAGAGGCAAACGCGGGATTAATCACGTAGAACTTCTTCAAAGAACTAATCAATTCAGGTTTTTGGACAAGGCAGCAATAGTCATGACCCCTACG AACGACCTCCAAAGCTCTACGAACAATCCAAATCCATGGAAGTTATGCACGGTGACATATGTAGAAGAAACCAAGATTCTAATCCGAATGCTCCCAATCA TCCTCAGCACAGTCTTCATGAACACATGCTTAGCCCAACTTCAAACCTTCACGATCCAACAGTCCACAACAATGGACCGAAACCTATTGGGTTTTGAAGT TCCCGGCCCATCTATCCCAGTCATCCCTCTTGTCTTTATGTTCCTCCTCATCCCTCTATACGACCGTGTGTTCGTCCCAATTGCCAGAAGATTCACCGGC ATCCCCACTGGAATACGCCATCTTCAGCGCATTGCCGTCGGCCTGGTGCTCTCCGCCATCTCCATGGCCGTGGCTGGAATCGTTGAGGCAAAGAGGAAAA GAGTAGCGGTTGAGAATGATATGGTGGATTCGGTGCTCCCCTTGCCTTACAGTGTGTTCTGGTTAGGGTTTCAGTATGCCATCTTCGGGGCGGCCGACAT GTTTACCCTAGTGGGGTTGCTGGAATTTTTCTACTCGGAGAGCTCGAGCGGGATGAAGGCGCTGAGCACGGCGATATCGTGGACGTCATTGGCGTTTGGG TATTATTTGAGCACTGTGGTTGTGGAGGTAGTGAATAAAGTGAGCGGTGGGTGGCTGGCTAGCAATAATTTGAATAGGGATAAGCTGAACTACTTCTATT GGTTGTTGGCCGGGTTGAGTGTTGTGAATCTGGGTGTGTATATAGTGTGTGCTTCTTGGTACAGATACAAGGAAGTGGAAGTTGTGGCAGAGGAATTTGG GGAAGAAGACCCCAAAGGGAAGCAAGTGGAAATGGCGACTACTGTTTAG
AA sequence Show only first row Show all	>Lus10006477 pacid=23142514 polypeptide=Lus10006477 locus=Lus10006477.g ID=Lus10006477.BGIv1.0 annot-version=v1.0 MGAVKKPRGKLGGNRATLFVFAMEGLENMAFVANAVSLFTYFYGYMNFSITKSATTLTNLMGTAFLLSLFGGFLSDTCLSRFTTCVLFGTFELLGYGLLA VQAHFNQLRPTPCNGAAALNNANQCEAASSGQSAMLYIGLYLIALGTGGVKAALPALGADQFDTRNLKEAPKLSSFFNWFLFSLTAGAIIGVTFVVWISA NQGWDWGFGLSGLAVLFAVVFVSMGKSIYRMNSPSGSPFVRFAQVFVAAIRNRNLPTPKAEDELYEIRERGKRGINHVELLQRTNQFRFLDKAAIVMTPT NDLQSSTNNPNPWKLCTVTYVEETKILIRMLPIILSTVFMNTCLAQLQTFTIQQSTTMDRNLLGFEVPGPSIPVIPLVFMFLLIPLYDRVFVPIARRFTG IPTGIRHLQRIAVGLVLSAISMAVAGIVEAKRKRVAVENDMVDSVLPLPYSVFWLGFQYAIFGAADMFTLVGLLEFFYSESSSGMKALSTAISWTSLAFG YYLSTVVVEVVNKVSGGWLASNNLNRDKLNYFYWLLAGLSVVNLGVYIVCASWYRYKEVEVVAEEFGEEDPKGKQVEMATTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27040			Major facilitator superfamily ...		Lus10006477 [exp]	0	1
					Lus10031026 [exp]	1.7	0.9496
AT5G45290			RING/U-box superfamily protein...		Lus10016428 [exp]	2.8	0.9608
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10032252 [exp]	3.2	0.9582
AT1G15780			unknown protein		Lus10015321 [exp]	6.8	0.9156
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10013917 [exp]	9.4	0.9433
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10023268 [exp]	9.5	0.9466
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Lus10025841 [exp]	10.8	0.9212
AT2G24560			GDSL-like Lipase/Acylhydrolase...		Lus10026405 [exp]	11.0	0.9292
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10019978 [exp]	12.8	0.8862
AT4G17900			PLATZ transcription factor fam...		Lus10004577 [exp]	13.6	0.9468

Compare expression of checked genes

Lus10006477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.