Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26530 102 / 4e-25 AR781 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) AT2G15760 63 / 4e-11 Protein of unknown function (DUF1645) (.1) AT3G62630 53 / 1e-07 Protein of unknown function (DUF1645) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032881 [exp] 388 / 1e-136 AT2G26530 129 / 2e-35 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10021757 [exp] 145 / 1e-40 AT2G26530 194 / 2e-59 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10032766 [exp] 144 / 2e-40 AT2G26530 193 / 4e-59 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10014025 [exp] 90 / 3e-20 AT2G15760 203 / 8e-63 Protein of unknown function (DUF1645) (.1) Lus10019892 [exp] 86 / 5e-19 AT2G15760 202 / 2e-62 Protein of unknown function (DUF1645) (.1) Lus10012069 [exp] 79 / 1e-16 AT2G15760 171 / 4e-51 Protein of unknown function (DUF1645) (.1) Lus10027912 [exp] 70 / 3e-13 AT2G15760 166 / 1e-48 Protein of unknown function (DUF1645) (.1) Lus10020690 [exp] 52 / 2e-07 AT3G62630 232 / 1e-72 Protein of unknown function (DUF1645) (.1) Lus10029855 [exp] 51 / 4e-07 AT3G62630 236 / 2e-74 Protein of unknown function (DUF1645) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G034900 [exp] 107 / 1e-26 AT2G26530 174 / 1e-51 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Potri.002G128500 [exp] 107 / 2e-26 AT2G26530 191 / 4e-58 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Potri.009G105400 [exp] 77 / 6e-16 AT2G15760 100 / 6e-24 Protein of unknown function (DUF1645) (.1) Potri.004G143500 [exp] 77 / 1e-15 AT2G15760 137 / 1e-37 Protein of unknown function (DUF1645) (.1) Potri.013G010400 [exp] 54 / 7e-08 AT3G62630 199 / 7e-60 Protein of unknown function (DUF1645) (.1) Potri.005G019600 [exp] 53 / 1e-07 AT3G62630 218 / 5e-67 Protein of unknown function (DUF1645) (.1) Potri.010G041300 [exp] 44 / 4e-05 AT1G23710 169 / 5e-51 Protein of unknown function (DUF1645) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07816 [flax] [poplar] DUF1645 Protein of unknown function (DUF1645)
Representative CDS sequence Show only first row Show all	>Lus10006479 pacid=23142509 polypeptide=Lus10006479 locus=Lus10006479.g ID=Lus10006479.BGIv1.0 annot-version=v1.0 ATGGAAGTGGCGTTACCTTCATCTCCTCCAAGCATGGGATTCGACTTCAACGATGCCAGGATTCTGCCTTTCCTCAGCGCTCCATCTTCCCCTCGCCGCT TCGGCGACTTGACTCTCAGCGTTCCCTCCAGCCCTTCTCGTGTCGCCGACCTCTACCGCAGCTTTGAGGATGCTTTCCAACACTGGGAAGAATTAGACAA GACCCCCAAGAAGCTCCCTTCCTTCAAAGAAGAGGATTTCGCTTTCGATTTCACCCCTGATTCCGAGAAAGATTCTCTCCCTGCCGACCAGCTCTTCCAC GGCGGCCGAATCCGCCCTTCTCTGCAGGCGGCAGATACTGTTAAAAGTAAAAGCCCTAATAATGAAAGGGGAAGGGGAAGAAGATCAGAGAGAGATTCTG GACTGACCTCGAGTTCGAGCCGCAGGGAGACCAGATCCGTTTCACCTTACAGAGTTTCGCAGTATCCATGGGAGGAAGAATTAGATCAATTCAGACAACA GAATCAACAGCAAATTACTAGTACTACTGCTGTTGCTGCCACTAATACTAGTACTATTTCTTCATCTGCCACTACTACCACAAAGAGTTCTTCGAGGAAG TGGAGACTGAGGGATCTGCTCTTGTTCAGAAGCGCATCAGAAGGAAGAGCGGGTGGCTTCTTCAAGAGACATGAAACTGATCATAGCTGCAACGTCATCC GGTCATCCGACAGCTTTGGTTCCAATAATAATAATAATAAGTCGAGGAAGAAAGCAGTTTCGGCACACGAGTTACATTACACAACCAACAAAGCAGCATC CGAAGGTCTGAGGAAGAAGACATTCTTGCCTTACAAACAGGGGATTCTAGGCAGATTTGCATTTGCTCCTGCTCTTCCGCGATGA
AA sequence Show only first row Show all	>Lus10006479 pacid=23142509 polypeptide=Lus10006479 locus=Lus10006479.g ID=Lus10006479.BGIv1.0 annot-version=v1.0 MEVALPSSPPSMGFDFNDARILPFLSAPSSPRRFGDLTLSVPSSPSRVADLYRSFEDAFQHWEELDKTPKKLPSFKEEDFAFDFTPDSEKDSLPADQLFH GGRIRPSLQAADTVKSKSPNNERGRGRRSERDSGLTSSSSRRETRSVSPYRVSQYPWEEELDQFRQQNQQQITSTTAVAATNTSTISSSATTTTKSSSRK WRLRDLLLFRSASEGRAGGFFKRHETDHSCNVIRSSDSFGSNNNNNKSRKKAVSAHELHYTTNKAASEGLRKKTFLPYKQGILGRFAFAPALPR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26530		AR781	Protein of unknown function (D...		Lus10006479 [exp]	0	1
AT5G53250		AGP22, ATAGP22	arabinogalactan protein 22 (.1...		Lus10037436 [exp]	1.4	0.9258
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10036519 [exp]	4.5	0.8450
AT1G76600			unknown protein		Lus10037249 [exp]	5.5	0.8947
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Lus10007493 [exp]	6.3	0.9005
AT4G17940			Tetratricopeptide repeat (TPR)...		Lus10022877 [exp]	6.3	0.8015
AT4G25800			Calmodulin-binding protein (.1...		Lus10029861 [exp]	9.5	0.8330
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10003466 [exp]	12.4	0.8656
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10032764 [exp]	12.8	0.7823
AT2G30630			P-loop containing nucleoside t...		Lus10021885 [exp]	13.3	0.8431
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019448 [exp]	14.9	0.8309

Compare expression of checked genes

Lus10006479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.