Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47420 131 / 1e-38 SDH5 succinate dehydrogenase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009768 [exp] 246 / 3e-84 AT1G47420 227 / 3e-75 succinate dehydrogenase 5 (.1) Lus10042661 [exp] 227 / 2e-76 AT1G47420 268 / 9e-91 succinate dehydrogenase 5 (.1) Lus10021742 [exp] 227 / 3e-76 AT1G47420 270 / 1e-91 succinate dehydrogenase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G032400 [exp] 164 / 1e-51 AT1G47420 281 / 6e-96 succinate dehydrogenase 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006480 pacid=23142517 polypeptide=Lus10006480 locus=Lus10006480.g ID=Lus10006480.BGIv1.0 annot-version=v1.0 ATGAATAAGATGTTGGCGCTGAGGTCTGTATGTCGAGCGGCTTCTCTTAGATCTTCGTTGAACTTGCCCGCTATCATCACCAACCATCTTTTACACCATC ACACGCCTCCCCGATCCCTGTTCACCCTTTCTTCCGCTGCCAATCGGCTCCCTTCCGGCTCCCTGGCTGCATTTACAAGTTGCATCGGTAGAACAAGAGC GTTTAGTGTGGATGTAGCACACTTGCCTGAGGTCAAAGACCCTGATGTCTTATGTGCCTTCAAGGACTTGATGGCTGCAAGCTGGGATGAACTCGATGTG ACTGCTGTCCATGATGTTAAAAATGCATTGTCCAAGAGCTCCGATGACAAGCCTGGTCAAGAAGTCTTGAAGAATGTTTTCCGAGCATCTCAAGCTGTGG AGGAATTCGGTGGGATGATCATGGCTTTAAAGATGGAGCTAGATGACAGTATTGGGATTGAGTGGTGA
AA sequence Show only first row Show all	>Lus10006480 pacid=23142517 polypeptide=Lus10006480 locus=Lus10006480.g ID=Lus10006480.BGIv1.0 annot-version=v1.0 MNKMLALRSVCRAASLRSSLNLPAIITNHLLHHHTPPRSLFTLSSAANRLPSGSLAAFTSCIGRTRAFSVDVAHLPEVKDPDVLCAFKDLMAASWDELDV TAVHDVKNALSKSSDDKPGQEVLKNVFRASQAVEEFGGMIMALKMELDDSIGIEW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47420		SDH5	succinate dehydrogenase 5 (.1)		Lus10006480 [exp]	0	1
AT2G32280			Protein of unknown function (D...		Lus10038567 [exp]	64.9	0.6624
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10037789 [exp]	89.9	0.6607
AT1G68140			Protein of unknown function (D...		Lus10025356 [exp]	92.1	0.6712
AT1G54070			Dormancy/auxin associated fami...		Lus10013180 [exp]	153.9	0.6403
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Lus10006738 [exp]	181.0	0.6506
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012399 [exp]	241.1	0.6360

Compare expression of checked genes

Lus10006480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.