Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47410 74 / 8e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009767 [exp] 248 / 4e-85 AT1G47410 125 / 5e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G127800 [exp] 143 / 8e-44 AT1G47410 82 / 2e-19 unknown protein Potri.014G032300 [exp] 129 / 2e-38 AT1G47410 105 / 2e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006481 pacid=23142508 polypeptide=Lus10006481 locus=Lus10006481.g ID=Lus10006481.BGIv1.0 annot-version=v1.0 ATGACATTCCCTTTTGTTTTAACTCAGGTTGTGGTTTCAGTAATCAGGAGCAGAGCCATGGAGAAGTCCAAGCACAAGGCTTTTGTTATTACTGACAACT TTTTAGGGGAACTGTTCTCGAGTCCGAGACGGTTGGTGCTTAAACATAAGAATGGAGATGATGTTGATGCAGATCAGGATGAATTCTTCTCTGTTGGGAG TTACCTCTCGTGTTGTTCGAGCGTTTTGAGCCGGGAAGAATTTATGTCTGTCAATACCAACTTGTCGAGATGTTCAAGCTTCAGCAAGGTGGAAGAGTTT CCGAGTTTTCAGAGGAGGGTATCCATATTGCAGGAGCTTTGTCACTGCGAAGGGTGGCCATTTGGTCTGTGCAGAAAGGCTGTTTTGCTTCCACCTCTGC CCAAATCTCCTTCAGAGTCCTGGTTATGGCGGAAAGGCACTAGATCGGTCAGACTTCCTTGA
AA sequence Show only first row Show all	>Lus10006481 pacid=23142508 polypeptide=Lus10006481 locus=Lus10006481.g ID=Lus10006481.BGIv1.0 annot-version=v1.0 MTFPFVLTQVVVSVIRSRAMEKSKHKAFVITDNFLGELFSSPRRLVLKHKNGDDVDADQDEFFSVGSYLSCCSSVLSREEFMSVNTNLSRCSSFSKVEEF PSFQRRVSILQELCHCEGWPFGLCRKAVLLPPLPKSPSESWLWRKGTRSVRLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47410			unknown protein		Lus10006481 [exp]	0	1
AT4G20880			ethylene-responsive nuclear pr...		Lus10023347 [exp]	1.4	0.9235
AT1G47410			unknown protein		Lus10009767 [exp]	2.4	0.9421
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10029000 [exp]	3.2	0.9061
AT1G54150			E3 Ubiquitin ligase family pro...		Lus10000533 [exp]	6.2	0.8736
					Lus10011339 [exp]	7.4	0.8928
AT4G23496		SP1L5	SPIRAL1-like5 (.1)		Lus10024667 [exp]	8.0	0.9078
AT5G63130			Octicosapeptide/Phox/Bem1p fam...		Lus10017947 [exp]	8.4	0.8998
AT1G21830			unknown protein		Lus10018177 [exp]	9.4	0.8957
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10041653 [exp]	9.8	0.9091
					Lus10033310 [exp]	11.2	0.8894

Compare expression of checked genes

Lus10006481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.