Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33380 164 / 4e-48 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009766 [exp] 229 / 3e-76 ND / Lus10009765 [exp] 230 / 5e-74 AT4G33380 392 / 2e-137 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G127700 [exp] 171 / 5e-51 AT4G33380 300 / 8e-101 unknown protein Potri.014G031900 [exp] 161 / 3e-47 AT4G33380 331 / 3e-113 unknown protein Potri.014G032100 [exp] 145 / 3e-43 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006482 pacid=23142510 polypeptide=Lus10006482 locus=Lus10006482.g ID=Lus10006482.BGIv1.0 annot-version=v1.0 ATGGCGAGGGGAGTGAAATGGAGTTGTTCGTACAAGAAGACGACTCTCATCGTTTGCGCCGTCAACATCGTCATAGCTCTCTATGTTCTTCGCTCTCTCT ACGGTTCACTTTACCTCTACTCCAACGATGATTTAGCTTACGGGATTCTGGCAAGAGCCTTGAAATCTGGTTGGGCAGAGCTTTCAGAGGACATGGGACT ATGGATACCTGGTGAACTCACTAACATAGAGCATGATGATAGACAGAATGGTGAAGAGGAGGATGAAGAAGAGGTTTTGCCGGGAAGACCCCTCCCAGCT GAATGCAATGCAGAGCTTCATTCAGATTATGATGGTGCGGCTGTGTGGTGGGGACCTCACCATCCTAAAGAAAGTGCTGCTGATTGCTGTCAAGCATGTT TGGATCAGGCTAAACGTGCTAAACCAGGTGAAATGCAATGCAACGTATGGGTCTATTGTCCCGCTGAGAACGGATGCTACTCCCCTGATGTCTATGAACA TAAGAATATGGAGTGCTGGCTTAAATATGTTGGTGTTGTAATGGGTAGTGAAGAGGGAAGCTCAGTGCCAGGTTGGAGTGTATTCGATGGAATAAAAGGA TTCTCATCCGCCCCAGAAACCCTAATGGCTGAGATCGACAGTGCAATTACTAAATTGGAATATGAGAGATCCACTGCTCATCTGGACTCCTCTTTATCAC CTGAACTAAGAGGGATTGAATCCTTCTCTGGCAGTGAATATGATGTTGGGATTGCAGACGAGGCTTATAGGGCTGGGTGTGCAGCTCTGGCTGTTGGAAA GCTTGACCAGGCTCTCCAATCTTTAAACACATCCCTCTCCAAGTGTCCGCCTGAGAAGAAATCTGCCATTGCCAAGCTTCAGTCGCTCATTTCCCTTACA TCCCACCAACTTCACCAGAGTTAA
AA sequence Show only first row Show all	>Lus10006482 pacid=23142510 polypeptide=Lus10006482 locus=Lus10006482.g ID=Lus10006482.BGIv1.0 annot-version=v1.0 MARGVKWSCSYKKTTLIVCAVNIVIALYVLRSLYGSLYLYSNDDLAYGILARALKSGWAELSEDMGLWIPGELTNIEHDDRQNGEEEDEEEVLPGRPLPA ECNAELHSDYDGAAVWWGPHHPKESAADCCQACLDQAKRAKPGEMQCNVWVYCPAENGCYSPDVYEHKNMECWLKYVGVVMGSEEGSSVPGWSVFDGIKG FSSAPETLMAEIDSAITKLEYERSTAHLDSSLSPELRGIESFSGSEYDVGIADEAYRAGCAALAVGKLDQALQSLNTSLSKCPPEKKSAIAKLQSLISLT SHQLHQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33380			unknown protein		Lus10006482 [exp]	0	1
AT3G46020			RNA-binding (RRM/RBD/RNP motif...		Lus10040854 [exp]	9.9	0.8192
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10028859 [exp]	13.9	0.8119
AT3G09890			Ankyrin repeat family protein ...		Lus10014410 [exp]	18.4	0.8032
AT1G54730			Major facilitator superfamily ...		Lus10035354 [exp]	24.4	0.8039
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10033806 [exp]	25.3	0.7555
AT5G51960			unknown protein		Lus10036504 [exp]	30.0	0.7779
AT1G25275			unknown protein		Lus10006792 [exp]	38.0	0.7715
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10015642 [exp]	40.4	0.7787
AT3G58090			Disease resistance-responsive ...		Lus10025274 [exp]	46.7	0.6819
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10001201 [exp]	58.1	0.7602

Compare expression of checked genes

Lus10006482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.