Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42700 207 / 2e-67 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G19184 187 / 8e-59 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G58280 107 / 5e-28 B3 AP2/B3-like transcriptional factor family protein (.1) AT2G24645 43 / 0.0001 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009764 [exp] 354 / 3e-125 AT5G42700 229 / 3e-76 AP2/B3-like transcriptional factor family protein (.1) Lus10014044 [exp] 193 / 8e-61 AT3G19184 250 / 2e-82 AP2/B3-like transcriptional factor family protein (.1) Lus10019870 [exp] 185 / 1e-56 AT3G19184 253 / 8e-83 AP2/B3-like transcriptional factor family protein (.1) Lus10035416 [exp] 126 / 1e-33 AT3G19184 129 / 2e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10032098 [exp] 124 / 3e-32 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10017434 [exp] 120 / 8e-32 AT5G58280 205 / 7e-64 AP2/B3-like transcriptional factor family protein (.1) Lus10007522 [exp] 120 / 1e-31 AT5G58280 206 / 9e-64 AP2/B3-like transcriptional factor family protein (.1) Lus10019873 [exp] 119 / 6e-31 AT5G42700 121 / 6e-32 AP2/B3-like transcriptional factor family protein (.1) Lus10019871 [exp] 110 / 8e-28 AT3G19184 116 / 2e-29 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G031700 [exp] 224 / 1e-73 AT5G42700 180 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031600 [exp] 209 / 8e-68 AT5G42700 156 / 1e-47 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103100 [exp] 209 / 3e-67 AT3G19184 232 / 5e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103200 [exp] 196 / 3e-62 AT3G19184 206 / 8e-66 AP2/B3-like transcriptional factor family protein (.1) Potri.007G042500 [exp] 131 / 2e-35 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.018G140700 [exp] 126 / 9e-34 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.005G137600 [exp] 126 / 2e-33 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 123 / 2e-32 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141800 [exp] 122 / 3e-32 AT3G19184 119 / 3e-30 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103300 [exp] 120 / 1e-31 AT3G19184 128 / 9e-34 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10006483 pacid=23142513 polypeptide=Lus10006483 locus=Lus10006483.g ID=Lus10006483.BGIv1.0 annot-version=v1.0 ATGGTGGCGAAGGCAAAGCAATCCAACTACGAGGAACTTCGACTAAATAGATTGGAAGAGAACAAGAAGCGAATGGAAGCACTAAATCTCCCTATGCTTT CTCAATCACTTCGTACCACCTCTCCTACACCTTCTCCGATGAAGCAATCCAAGCCTCGCCCTCGTGTGGTGGAGAAGCAAATTGTTGTTGTCAGGAGATC CAGCCGTGTCGCCAATAAACCCTCTCCTGTCTATGCTGAAGTTATTGTAGAACGAGTAGTGATACCTAGAAGGGTGTCGTCAAAGACAAGGGATCTCTCA AACCGGGTGTATGCAAGTGATGAAGCCAGGGCAGAAGCTCTTGAGAAAGCAGAGAATTTGCAGTCTAGTTTAGAATCTCACTACCCTTCTTTTGTCAAAT CCATGCTTATATCCCATGTTTCTGGTGGATTTTGGCTGGCATTCTGTGTGGACGATCCACAGGGTCTTCCTGTATGGTTCTGCAAGCCAAACCTTCCAAA ACGTGACGAAGTGATGACTTTGATAGACGAGGAAGGTGATGAGTACCCGACGATATATCTTCCCAGAAAGACAGGACTGAGTGGTGGATGGAAAGGGTTT GCTGTAGCTCACAATTTGGCAGATGGGGATGCTTTAATTTTCCAATTGATCACCTCTACATCATTCAAGGTGTACATCACAAGGGCTAAGGGTTCCCAAG AGGTAAGTGACAATAACAACATTTGA
AA sequence Show only first row Show all	>Lus10006483 pacid=23142513 polypeptide=Lus10006483 locus=Lus10006483.g ID=Lus10006483.BGIv1.0 annot-version=v1.0 MVAKAKQSNYEELRLNRLEENKKRMEALNLPMLSQSLRTTSPTPSPMKQSKPRPRVVEKQIVVVRRSSRVANKPSPVYAEVIVERVVIPRRVSSKTRDLS NRVYASDEARAEALEKAENLQSSLESHYPSFVKSMLISHVSGGFWLAFCVDDPQGLPVWFCKPNLPKRDEVMTLIDEEGDEYPTIYLPRKTGLSGGWKGF AVAHNLADGDALIFQLITSTSFKVYITRAKGSQEVSDNNNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10006483 [exp]	0	1
AT1G22660			Polynucleotide adenylyltransfe...		Lus10025499 [exp]	2.4	0.8367
AT2G25870			haloacid dehalogenase-like hyd...		Lus10006031 [exp]	3.3	0.8470
AT3G52170			DNA binding (.1.2)		Lus10017453 [exp]	5.3	0.8445
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10032315 [exp]	5.7	0.8339
AT1G20720			RAD3-like DNA-binding helicase...		Lus10012249 [exp]	8.9	0.8146
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10037799 [exp]	15.7	0.8087
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10039409 [exp]	18.2	0.7984
AT4G39630			unknown protein		Lus10035849 [exp]	23.7	0.8005
AT2G02150		EMB2794	EMBRYO DEFECTIVE 2794, Tetratr...		Lus10034421 [exp]	27.4	0.8154
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10022280 [exp]	35.0	0.8164

Compare expression of checked genes

Lus10006483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.