Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47380 695 / 0 Protein phosphatase 2C family protein (.1) AT1G68410 498 / 1e-175 Protein phosphatase 2C family protein (.1.2) AT1G09160 474 / 3e-166 Protein phosphatase 2C family protein (.1.2) AT1G43900 105 / 5e-25 Protein phosphatase 2C family protein (.1) AT5G53140 106 / 6e-25 Protein phosphatase 2C family protein (.1) AT4G31750 102 / 2e-24 WIN2 HOPW1-1-interacting 2 (.1) AT5G24940 103 / 5e-24 Protein phosphatase 2C family protein (.1) AT5G10740 102 / 6e-24 Protein phosphatase 2C family protein (.1) AT1G78200 99 / 2e-23 Protein phosphatase 2C family protein (.1.2) AT2G34740 97 / 3e-22 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009763 [exp] 806 / 0 AT1G47380 719 / 0.0 Protein phosphatase 2C family protein (.1) Lus10042659 [exp] 750 / 0 AT1G47380 704 / 0.0 Protein phosphatase 2C family protein (.1) Lus10021737 [exp] 746 / 0 AT1G47380 701 / 0.0 Protein phosphatase 2C family protein (.1) Lus10020666 [exp] 487 / 2e-171 AT1G09160 662 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10019012 [exp] 113 / 1e-27 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10026239 [exp] 108 / 8e-27 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 108 / 9e-27 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10014926 [exp] 109 / 1e-26 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10026908 [exp] 107 / 6e-26 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G031200 [exp] 696 / 0 AT1G47380 717 / 0.0 Protein phosphatase 2C family protein (.1) Potri.002G127300 [exp] 684 / 0 AT1G47380 701 / 0.0 Protein phosphatase 2C family protein (.1) Potri.010G121600 [exp] 516 / 0 AT1G68410 635 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G123600 [exp] 510 / 2e-180 AT1G68410 679 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G021200 [exp] 474 / 3e-166 AT1G09160 642 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G011600 [exp] 465 / 9e-163 AT1G09160 604 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.018G013900 [exp] 107 / 5e-26 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.019G071600 [exp] 109 / 7e-26 AT1G07160 268 / 8e-86 Protein phosphatase 2C family protein (.1) Potri.012G002100 [exp] 107 / 7e-26 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.015G019200 [exp] 106 / 2e-25 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10006485 pacid=23142518 polypeptide=Lus10006485 locus=Lus10006485.g ID=Lus10006485.BGIv1.0 annot-version=v1.0 ATGTCAAACGCAAGGGAGCATCATCAAACTATTCCGCTCTCAGTGCTGCTAAAGCGAGAATTGGCTCATGAGAAGATCGAGAAGCCTGAGCTGGTGCACG GACAAGCCAACCAGAGCAAGAAAGGAGAGGATTTCACCCTAATCAAAACTGAGTGCCAAAGGAACCTTTGCGATGGCGTTACTACCTACTCCGTTTTTGG GTTATTTGATGGTCACAATGGCTCTGCAGCTGCGATTTATACCAAGGAGAATCTTCTAAACAATGTTATATCTGCCATTCCTCAAGATCTTAATCGAGAG GAGTGGCTAGCCGCACTTCCCAGGGCTTTGGTTGCTGGCTTTGTCAAAACAGATAAAGAGTTTCAAGATAGAGGACAACCATCTGGAACCACCGTCACCT TTGTGATCATTGAAGGATGGGTTGTAACTGTTGCATCTGTTGGTGATTCCCGATGTATACTTGAATCTGCTGAAGGTGATCTCTACTACTTGTCAGCAGA TCACAGGCTCGATTGCAATGCCGAGGAGAGGGATCGTATCACAGCAAGTGGGGGTGAAGTAGGGCGCCTGAATACTGGTGGTGGTGCAGAGATTGGTCCG CTGAGATGCTGGCCTGGTGGATTATGTCTCTCGCGATCCATCGGAGATATGGATGTTGGCGAGTTCATCGTTCCTGTTCCGTATGTGAAGCAAGTTAAGT TGTCTACGGGTGGTGGTAGACTAATCATATCAAGTGATGGAGTTTGGGATTCTTTGAGTGCGGAAACGGCTCTTGACTGTTGCCGTGGAATGCCATCAGA AGCTGCAGCATCACAAATCGTTAAAGAAGCCGTACACCCGAAGGGAATTAGGGATGACACAACGTGCATAGTGGTGGACATACTACCAATTGAGAAGCCA GCTGCCCCTCACCCAGCCCCAAGGAGACAACAAGTAAAAGGAGTATTGAGGTCTATGTTCCGGAAGAAGTCTTCTGAATCATCTTCTCATGCAGAGAAAG AATATGTTGAGCCCGATGTTGTGGAAGAGATGTTTGAGGAAGGTTCTGCCATGCTTTCAGAAAGGTTAGAAACAAAGTATCCATTAAGCAACATGTTCAA GTTGTTCATGTGTGCGGTGTGCCAAGTAGAGATAAGACCCGAGGAAGGTGTTTCAATACATGCTGGGGGGGCTAATGTGAGAAACCTACGCCCCTGGGAT GGCCCTTTCCTTTGTCTTAGTTGCCAAAACAAGAAAGAAGCCATGGAAGGGAAAAGACCATCTGGAGATAGACACAGTAGCGAAAGTGAGTAA
AA sequence Show only first row Show all	>Lus10006485 pacid=23142518 polypeptide=Lus10006485 locus=Lus10006485.g ID=Lus10006485.BGIv1.0 annot-version=v1.0 MSNAREHHQTIPLSVLLKRELAHEKIEKPELVHGQANQSKKGEDFTLIKTECQRNLCDGVTTYSVFGLFDGHNGSAAAIYTKENLLNNVISAIPQDLNRE EWLAALPRALVAGFVKTDKEFQDRGQPSGTTVTFVIIEGWVVTVASVGDSRCILESAEGDLYYLSADHRLDCNAEERDRITASGGEVGRLNTGGGAEIGP LRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKLSTGGGRLIISSDGVWDSLSAETALDCCRGMPSEAAASQIVKEAVHPKGIRDDTTCIVVDILPIEKP AAPHPAPRRQQVKGVLRSMFRKKSSESSSHAEKEYVEPDVVEEMFEEGSAMLSERLETKYPLSNMFKLFMCAVCQVEIRPEEGVSIHAGGANVRNLRPWD GPFLCLSCQNKKEAMEGKRPSGDRHSSESE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47380			Protein phosphatase 2C family ...		Lus10006485 [exp]	0	1
AT1G45207			Remorin family protein (.2)		Lus10010227 [exp]	1.0	0.8597
AT4G28550			Ypt/Rab-GAP domain of gyp1p su...		Lus10024920 [exp]	7.7	0.8438
AT4G30390			unknown protein		Lus10020378 [exp]	16.3	0.7979
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10034643 [exp]	16.9	0.8584
AT3G54120			Reticulon family protein (.1)		Lus10035537 [exp]	18.5	0.7808
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10014185 [exp]	20.0	0.7978
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Lus10005370 [exp]	21.4	0.8228
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Lus10020521 [exp]	22.0	0.8254
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10010957 [exp]	25.5	0.8277
AT2G19880			Nucleotide-diphospho-sugar tra...		Lus10012951 [exp]	31.4	0.8215

Compare expression of checked genes

Lus10006485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.