Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33350 326 / 5e-113 AtTic22-IV translocon at the inner envelope membrane of chloroplasts 22-IV, Tic22-like family protein (.1.2) AT3G23710 143 / 9e-41 AtTic22-III translocon at the inner envelope membrane of chloroplasts 22-III, Tic22-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009759 [exp] 463 / 2e-166 AT4G33350 355 / 3e-124 translocon at the inner envelope membrane of chloroplasts 22-IV, Tic22-like family protein (.1.2) Lus10022378 [exp] 152 / 2e-44 AT3G23710 305 / 2e-103 translocon at the inner envelope membrane of chloroplasts 22-III, Tic22-like family protein (.1) Lus10007784 [exp] 137 / 7e-39 AT3G23710 257 / 2e-85 translocon at the inner envelope membrane of chloroplasts 22-III, Tic22-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G030000 [exp] 364 / 8e-128 AT4G33350 359 / 5e-126 translocon at the inner envelope membrane of chloroplasts 22-IV, Tic22-like family protein (.1.2) Potri.002G126800 [exp] 364 / 9e-128 AT4G33350 374 / 7e-132 translocon at the inner envelope membrane of chloroplasts 22-IV, Tic22-like family protein (.1.2) Potri.002G236000 [exp] 153 / 1e-44 AT3G23710 351 / 7e-122 translocon at the inner envelope membrane of chloroplasts 22-III, Tic22-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04278 [flax] [poplar] Tic22 Tic22-like family
Representative CDS sequence Show only first row Show all	>Lus10006487 pacid=23142507 polypeptide=Lus10006487 locus=Lus10006487.g ID=Lus10006487.BGIv1.0 annot-version=v1.0 ATGGAGCCCTATAAACCCTCAAACCCTCTCTTATCCTTCTCCTCCTTTCTCCACCAACAATGTCTCCGCATAGGCTCCGATTTCTCCACTCGCCTCGGCG ACACCACTCGAGCCCTATCCACCTCCTTCCCCGCAGCAAGGGCCAGGAGGCTCAACCTTCCACCGCCGCCGCTATTCGCCTCAGTTTCTGAGGCGAAACC GTCATCGCCAAGGCTCAGCTCCGATTACGTGGCTAAGAGACTCACTGGCACGACCGTCTACACGGTGAGCAACACCAACAACGAGTTCGTCCTCATTTCT GATCCTGATGGAGCTAAGTCCATTGGATTGCTCTGCTTCCGCAAAGAAGATGCTGAAGCTTTTCTGTATCAGGTGCGATTGCGAAGAAATGAATTACGAA GTGCGGCGAAGGTAGTGCCTATTACTCTTGAGCAGGTCTACATGCTGAAGGTTGAAGGCATTTCATTCAGGTTCTTGCCAGATCCTGTCCAAATAAAGAA CGCATTGGAGATGAAAACTTCCAGCACAAGCAGCGGGTTCGATGGAGTTCCTGTTTTCCAGTCAGAACTTCTGGCAGTGAAGAAGAAAAACAGGCGTTTC TGCCCTATATACTTCCAAAAGGTATTTGGACTTGCTGAGGACATAGATAAAGAATTGACCAAGGTTTCAAGAGGGAGAGCCATTTCTCCTAATATAATGG TGGGGAGCTTGGAAGATGTTGTGAGAAAAATTGAGACGAGTGAGAAAAACTCGGGTTGGGAAGATTTGATATTCATTCCACCTGGTAAAACACAGTCCGA ACACATTAATGACATAACCAAGTGA
AA sequence Show only first row Show all	>Lus10006487 pacid=23142507 polypeptide=Lus10006487 locus=Lus10006487.g ID=Lus10006487.BGIv1.0 annot-version=v1.0 MEPYKPSNPLLSFSSFLHQQCLRIGSDFSTRLGDTTRALSTSFPAARARRLNLPPPPLFASVSEAKPSSPRLSSDYVAKRLTGTTVYTVSNTNNEFVLIS DPDGAKSIGLLCFRKEDAEAFLYQVRLRRNELRSAAKVVPITLEQVYMLKVEGISFRFLPDPVQIKNALEMKTSSTSSGFDGVPVFQSELLAVKKKNRRF CPIYFQKVFGLAEDIDKELTKVSRGRAISPNIMVGSLEDVVRKIETSEKNSGWEDLIFIPPGKTQSEHINDITK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33350		AtTic22-IV	translocon at the inner envelo...		Lus10006487 [exp]	0	1
AT2G47640			Small nuclear ribonucleoprotei...		Lus10026556 [exp]	4.0	0.9088
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10010641 [exp]	9.6	0.9154
AT2G34060			Peroxidase superfamily protein...		Lus10005278 [exp]	13.0	0.8982
AT5G45590			Ribosomal protein L35 (.1)		Lus10012140 [exp]	17.3	0.9023
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10014080 [exp]	20.5	0.8709
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Lus10037932 [exp]	21.7	0.9082
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Lus10014947 [exp]	28.6	0.8561
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Lus10026101 [exp]	31.4	0.8846
AT1G31860		HISN2, AT-IE	HISTIDINE BIOSYNTHESIS 2, hist...		Lus10034105 [exp]	31.6	0.8407
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10007782 [exp]	33.6	0.8933

Compare expression of checked genes

Lus10006487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.