Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19290 155 / 6e-43 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT4G34000 147 / 9e-40 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT1G45249 146 / 9e-40 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT1G49720 146 / 1e-39 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT3G56850 117 / 9e-30 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT3G44460 105 / 2e-25 bZIP DPBF2, ATBZIP67 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G41070 102 / 9e-25 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT5G42910 99 / 1e-22 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G36270 82 / 1e-16 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G03970 58 / 2e-09 bZIP GBF4 G-box binding factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009755 [exp] 467 / 2e-163 AT1G45249 283 / 3e-91 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10014066 [exp] 167 / 2e-47 AT3G19290 345 / 1e-115 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10027897 [exp] 159 / 4e-44 AT3G19290 289 / 1e-93 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10002399 [exp] 120 / 4e-30 AT3G19290 203 / 2e-61 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10008928 [exp] 107 / 2e-27 AT3G56850 137 / 4e-40 ABA-responsive element binding protein 3 (.1) Lus10028889 [exp] 108 / 2e-26 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10021369 [exp] 107 / 9e-26 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10017049 [exp] 104 / 1e-24 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008929 [exp] 103 / 1e-24 AT3G56850 214 / 3e-68 ABA-responsive element binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G125400 [exp] 187 / 1e-54 AT1G45249 306 / 4e-100 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.014G028200 [exp] 185 / 2e-54 AT1G45249 317 / 2e-105 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.004G140600 [exp] 164 / 3e-46 AT4G34000 321 / 8e-106 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.009G101200 [exp] 158 / 5e-44 AT4G34000 358 / 2e-120 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.006G083000 [exp] 111 / 4e-27 AT2G36270 313 / 1e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.010G248100 [exp] 109 / 8e-27 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.010G248300 [exp] 108 / 2e-26 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.008G010800 [exp] 107 / 4e-26 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.009G018500 [exp] 101 / 2e-24 AT3G56850 160 / 1e-47 ABA-responsive element binding protein 3 (.1) Potri.001G220700 [exp] 100 / 4e-24 AT3G56850 152 / 2e-44 ABA-responsive element binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10006489 pacid=23142520 polypeptide=Lus10006489 locus=Lus10006489.g ID=Lus10006489.BGIv1.0 annot-version=v1.0 ATGGGTACCAACTGGAATTTCAACAACATCACCAACGATTCAGCGCAGCCGCCGGGGAACAACATGGCATTAACGAGGCAATTGTCGTCAATATACTCGT TGACGTTTGATGAGTTCCAGAGCAGTGTAGGTGGGATAGGGAAGGACTTTGGGTCGATGAACATGGATGAGCTGCTGAAGAACATATGGAGTGCTGAGGA GAATCAGAATCAGAATCACGTCAACATGGGGGCAGCAGAGGACGGCGGTATTCTGCTGCAACGACAAGGATCATTAACGTTGCCTAGAACTCTGAGCCAG AAGACAGTGGATGAAGTTTGGAAGGACGTATGGAAGGATTATGGGAGTGGGAGTAGTGGAGTAGGAGTAGGAGATAGTGGATCAGGAAGGAATCCGCAAA GGCAGCAGACATTGGGGGAAATTACATTGGAGGAGTTTTTGGTTAGAGCTGGAGTTGTTAGGGAAGACATTACTACACCTGTAGTAGCAGCTGGAAAAGT TCAGCAGTCAAATGGAGTAGTAGGGGTTTCTCCTTTTGGGAATAACACTACTACTGTTGGGTATGGAATTGGGTTTCAGCAAAGCAACGGAGCAAGTCAT GGAGTGGGTTTGAGTAGCGGTAGTAATAATCCCAACTATGGTTCAAATTCGAGTTTGAATGTGAATGGTATTATTAGATCCAATCAAGTGCAGCCACAGT TACAGGTGCATCAGCATCAGCATCAGCATCAGCATCAGCCTCCTCAAATATTTCCAAAGCTGCAGGGTAATGTGGGATATGGTGGAATGATGGGGATTGG GGATCCAGGGTTGGATAATCAAGGAATGGCTGGATTAGGAGGAGGGTCATCGCCAGCTAGCCAGGTTTCATCAGATGGGATTGGGAAGAGCAATGGGGAG ACATCATCAGTGTCGCCTAGTGTACCATATCCGTATAGTGGGGGTGTGAGGGGGAGAAGAGCTAATACAGCAGTGGAGAAGGTGGTGGAAAGGAGGCAGA AGAGAATGCTCAAGAATAGAGAATCTGCTGCTAGGTCTAGAGCTCGTAAGCAGGCATATACTACGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGA GAATCAACAGTTGAAGAGGAAACAGGAAGAAATGACGGAGATGCAGAAAAATCAGGTTTCTCTCTGTGGAATGGAAACTACTGCTCCTTCCTTCCCCGAA CCTCTATGA
AA sequence Show only first row Show all	>Lus10006489 pacid=23142520 polypeptide=Lus10006489 locus=Lus10006489.g ID=Lus10006489.BGIv1.0 annot-version=v1.0 MGTNWNFNNITNDSAQPPGNNMALTRQLSSIYSLTFDEFQSSVGGIGKDFGSMNMDELLKNIWSAEENQNQNHVNMGAAEDGGILLQRQGSLTLPRTLSQ KTVDEVWKDVWKDYGSGSSGVGVGDSGSGRNPQRQQTLGEITLEEFLVRAGVVREDITTPVVAAGKVQQSNGVVGVSPFGNNTTTVGYGIGFQQSNGASH GVGLSSGSNNPNYGSNSSLNVNGIIRSNQVQPQLQVHQHQHQHQHQPPQIFPKLQGNVGYGGMMGIGDPGLDNQGMAGLGGGSSPASQVSSDGIGKSNGE TSSVSPSVPYPYSGGVRGRRANTAVEKVVERRQKRMLKNRESAARSRARKQAYTTELEAEVAKLKEENQQLKRKQEEMTEMQKNQVSLCGMETTAPSFPE PL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Lus10006489 [exp]	0	1
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Lus10009755 [exp]	1.0	0.9186
AT3G14280			unknown protein		Lus10003937 [exp]	3.2	0.9011
AT1G21890			nodulin MtN21 /EamA-like trans...		Lus10021201 [exp]	13.0	0.8793
					Lus10011267 [exp]	26.8	0.8803
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10016637 [exp]	31.9	0.8536
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10002491 [exp]	41.1	0.8602
AT5G18670		BAM9, BMY3	BETA-AMYLASE 9, beta-amylase 3...		Lus10012804 [exp]	42.0	0.8538
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023184 [exp]	43.3	0.8195
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10012059 [exp]	49.9	0.8499
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Lus10028273 [exp]	50.4	0.8616

Compare expression of checked genes

Lus10006489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.