Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42920 792 / 0 AtTHO5 THO complex, subunit 5 (.1.2) AT1G45233 477 / 7e-162 AtTHO5 THO complex, subunit 5 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009754 [exp] 1340 / 0 AT5G42920 889 / 0.0 THO complex, subunit 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G028100 [exp] 946 / 0 AT5G42920 827 / 0.0 THO complex, subunit 5 (.1.2) Potri.002G125300 [exp] 303 / 8e-95 AT5G42920 318 / 6e-102 THO complex, subunit 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09766 [flax] [poplar] FmiP_Thoc5 Fms-interacting protein/Thoc5
Representative CDS sequence Show only first row Show all	>Lus10006490 pacid=23142512 polypeptide=Lus10006490 locus=Lus10006490.g ID=Lus10006490.BGIv1.0 annot-version=v1.0 ATGGAGGACGGGGAGATAGTGGAAGCAGTCGCGATGGATGAGGACCTGCAGCTGCTCAAGAACGGCAAGTCGGCATACGACCTTCTCCGAGATAGCAAAG CTTCGGTGGAGGAAATCGTCTCCCAGATCGTCTCCATGAAAAAAGACAGCAAGGACAAATCGCAGCTCCGGGAGCTCGTTACTCAAACGTTTCTTCATTT CGTCACTCTCCGCCAGGTCAATAGGTCGATTTTGCTGCACGAAGATCGAGTGAAGGCGGACACGGAGCGTGCCAAGACTCCTGTGGATTTCACGACTTTG CAGCTGCATAACTTGATGTATGAGAAGAGCCATTACGTCAAAGCTATAAAGGCCTGTAAAGACTTCAAATCCAAGTATCCAGACATCCAGCTCCTTCCTG AAGAGGAGTTCTTTCGAGATGCGCCAGATGATATCAAGAGTTTCGTCTTGTCGAGCGATGGCTCTCAGAATTTGATGCTCAAAAGACTCAACTTTGAGCT CCACCAGCGAAAGGAGCTTTGCAAGCTTCGTGAGAAACTGGAATCACAGAAGAAAAGCCTTCTGGAGATGATTGCAAATAGGAAGAAGTTCTTGTCAAGT CTTCCATCACACCTTAAGTCACTCAAGAAAGCATCGTTGCCTGTACAGAACCAATTGGGGATAATGCATACTAAGAAACTAAAACAGTATAGCTCAGCAG AGCTACTTCCTCCTCCTCTCTATGTGATCTTCTCTCAGTTGGTGGCCCAGAAGGAGGCGTTTGGTGAAGAGATTGACGTTGATATTATTGGGAGTTTAAA AGATGCTCAAAATTTTGCTCGCCAGCAAGCGAGTAAAGAAACCAGTGCATCTGCCAATGTAGAGACTCTGAGGGTTGATGATGATGTACCTGAGGACGAA GATGATGTGCAAAGAAGGAGAAAGCGACCTAAAAGGGCCCCGAGTAAGGAGAATACTGATCAGGCAGGGTTACATCAAGTTCACCCACTTAAGCTCCTCC TTCACATATACGATGATGAGGCTTCTGATCCCAAATCCACGAAACTCTTTACTTTGAAGTTTGAATACCTGTTAAAGCTACACGTAGTCTGTGTTGGAGT GGAAGATTCACACGAGGGAGCTGAGAATAACATCCTGTGCAACTTATTCCCTAATGACACTGGGACTGAACTTCCTCACCAGCCTGCCAAGCTCACAGCT GGTAGTTCACTTGCCTTTGATGAGAAGAAAACTTCTCGTCCATATAAGTGGGCTCAACATTTGGCCGGAATTGATTTCTTACCAGAGATGCCACCATTGC TGAGTAGTCATGAAAAATCAAGTAGTGAAACATCTAAAACTGATGCTGTATCTGGACTATCATTATATCGACAACAGAATCGGGTGCAGACAGTTGTTGA AAGAATTCGCTCTCGGAAAAGGGCTCAGCTGGCTCTTGTGGAGCAGCTCGATTCGCTTATGCAGCTTAAGTGGCCTTCTATGAATTGTGAAAGCATTCCA TGGGCTTTGCATACTCCTTTGTGCAGTTTGGATGGTTGGTCATCTCTAGGGCCGCTACCTAATCAGGTTTCTTCCTTGCATGCCATTCCTACGGATGAAG TCGAGGAACACATGGATGTTGATAATGGACAATCTAGTACTTCAAAGGAAGTGTTAGAGGGTATGAGGGAAGATGGGGAGCTCCCATCCTTGGTTCAGAG GGGTTCCATGGCAGATGATTCAATGGTGTCCAATGCAGAGCGGTCTAGGCAGCTGGCTTTGATTTCAAAGAGCATTATATCTCCACTGCACAAGGTTAAG TCACAAAGCTTTAAGAAATATGATGAAGATTTAGAACTACTATTAGATATTGATAGTGATCATGATGAGCTTGCCCCAACTGAGCAAGAGGCAGATGATA TGGATTCGATTCGAAGCCATTCAATTTCCTCAGAATCCTGGGTTGATTTTGGTGCTAAAGAGTATTCCCTTGTCTTGGCAAGAAAACTGAGCTCCGAAGG GAGGAGTGTGAAGTTAGAAGCAAAGATTAAGATTAGCATGGAGTATCCTCTAAGGCCACCTTTGTTTTCATTGGGCATATGTCGTTCTGAAGGAATCCAG AATGAAGTTGATGATTCTAAATGGTACAACGAACTTCGTGCCATTGAAGCAGAGGTAAACCTCAATATACTGGAATTAGTGCCAAATGATGGAGAAAACT ACATGATAGGGCACCAAATTCTATGTCTTGCCATGTTGTTTGACCATCTTATAGACGAGGAAGCGTCACGTAGCGAGAAGAATAGCCACGTTGTTGATGC CGGTTTGTCAAAGCCGGTTATTGGTACAATTATGGGTAGGCTACATAGAGGGAAGGACCGGAGGAGGATGATATCTTGGAAGGGCGTCTAG
AA sequence Show only first row Show all	>Lus10006490 pacid=23142512 polypeptide=Lus10006490 locus=Lus10006490.g ID=Lus10006490.BGIv1.0 annot-version=v1.0 MEDGEIVEAVAMDEDLQLLKNGKSAYDLLRDSKASVEEIVSQIVSMKKDSKDKSQLRELVTQTFLHFVTLRQVNRSILLHEDRVKADTERAKTPVDFTTL QLHNLMYEKSHYVKAIKACKDFKSKYPDIQLLPEEEFFRDAPDDIKSFVLSSDGSQNLMLKRLNFELHQRKELCKLREKLESQKKSLLEMIANRKKFLSS LPSHLKSLKKASLPVQNQLGIMHTKKLKQYSSAELLPPPLYVIFSQLVAQKEAFGEEIDVDIIGSLKDAQNFARQQASKETSASANVETLRVDDDVPEDE DDVQRRRKRPKRAPSKENTDQAGLHQVHPLKLLLHIYDDEASDPKSTKLFTLKFEYLLKLHVVCVGVEDSHEGAENNILCNLFPNDTGTELPHQPAKLTA GSSLAFDEKKTSRPYKWAQHLAGIDFLPEMPPLLSSHEKSSSETSKTDAVSGLSLYRQQNRVQTVVERIRSRKRAQLALVEQLDSLMQLKWPSMNCESIP WALHTPLCSLDGWSSLGPLPNQVSSLHAIPTDEVEEHMDVDNGQSSTSKEVLEGMREDGELPSLVQRGSMADDSMVSNAERSRQLALISKSIISPLHKVK SQSFKKYDEDLELLLDIDSDHDELAPTEQEADDMDSIRSHSISSESWVDFGAKEYSLVLARKLSSEGRSVKLEAKIKISMEYPLRPPLFSLGICRSEGIQ NEVDDSKWYNELRAIEAEVNLNILELVPNDGENYMIGHQILCLAMLFDHLIDEEASRSEKNSHVVDAGLSKPVIGTIMGRLHRGKDRRRMISWKGV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10006490 [exp]	0	1
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Lus10034481 [exp]	2.0	0.9253
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10001973 [exp]	4.2	0.9236
AT1G32810			RING/FYVE/PHD zinc finger supe...		Lus10001662 [exp]	5.0	0.8846
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036689 [exp]	5.5	0.8987
AT1G14740			Protein of unknown function (D...		Lus10030770 [exp]	6.1	0.8741
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Lus10037589 [exp]	6.3	0.9141
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10021253 [exp]	6.7	0.9146
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Lus10035376 [exp]	7.9	0.9061
AT4G08350		GTA2, GTA02	global transcription factor gr...		Lus10028630 [exp]	12.5	0.8728
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031732 [exp]	13.0	0.8932

Compare expression of checked genes

Lus10006490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.