Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10120 214 / 4e-66 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G68920 180 / 5e-52 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G26260 171 / 7e-50 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT4G34530 159 / 1e-45 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT3G07340 161 / 4e-45 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G23690 155 / 6e-44 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G50915 149 / 2e-42 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G48560 152 / 1e-41 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G59640 149 / 1e-41 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2) AT2G18300 149 / 1e-41 bHLH bHLH064, HBI1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012484 [exp] 604 / 0 AT1G10120 202 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029110 [exp] 177 / 1e-50 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10013052 [exp] 171 / 1e-48 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10030581 [exp] 173 / 1e-47 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 173 / 2e-47 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10023562 [exp] 154 / 5e-44 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10040448 [exp] 154 / 7e-44 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Lus10003172 [exp] 147 / 3e-41 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030807 [exp] 146 / 3e-41 AT1G59640 300 / 6e-103 BIG PETAL UB, BIG PETAL P (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G146500 [exp] 342 / 2e-115 AT1G10120 266 / 3e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G114700 [exp] 338 / 2e-114 AT1G10120 274 / 3e-89 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G136100 [exp] 174 / 2e-49 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.008G113200 [exp] 174 / 3e-49 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G235400 [exp] 172 / 1e-48 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G248500 [exp] 172 / 2e-48 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 167 / 2e-46 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G104900 [exp] 157 / 1e-44 AT5G50915 177 / 3e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.010G040000 [exp] 149 / 8e-43 AT1G59640 273 / 1e-92 BIG PETAL UB, BIG PETAL P (.1.2) Potri.004G156000 [exp] 152 / 4e-42 AT4G34530 206 / 1e-62 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10006491 pacid=23141643 polypeptide=Lus10006491 locus=Lus10006491.g ID=Lus10006491.BGIv1.0 annot-version=v1.0 ATGGGTGGTAATGGTGGTGATCTGAGTTATCAGCATGATATGGAGTCCCAAATTAGAGCTGCACCATCAGCAATGGCAGCAAATCCCTTCTTTGCTTCTG CTTGGGATCCAGTTGTTTCACTTGGGCAGCATGAGAGCTCTGTTGGTTCATCCACGATGTGTCAAAATGAATTTTCCCATCATCAGTCTTTCCCAATGGC ATTGGACAACCAACCAGGTAGTGACAACTCTCATCTTGTTCACTACCCGTTTGATTCGGGCTTGGTCGAGCTGGTGGGAAATGGGAATTTCTCAGAGATG GTTGGCCCTTTTGGGCTTAATGAATGTGGGCAGATTCCCAATCCGGGTTTGCATCCCAATTTCGGATCACAGACCGATCAAGAGGATCACCCAATGTCTG AAGGTGGAGTAGGAGCTTCACCTGATATAAACAAGAGGAAAAGGGTTGCGGGTTCTACTTCTCCTTTTGATTCCAACAAGAAGAATGCTAAAGGGGAGCT GGATGAGGATCAATCAAGAGAGAATTGTGATGCTCTGAAAGAAGGAGATGATAAGAAACCTAGACCGGGAAGAATTGCTGGTTCTAATTCACAGGCAGCT AAACAAGCTAAAGAAGAGTCTAATAACAGTGGAGAAAGTGCTAAAGATAATTACATTCATATCAGAGCCAGAAGGGGTCAGGCTACAAATAGTCACAGCC TTGCAGAAAGGGTGAGAAGAGAAAAGATCAGTGAAAGGATGAGACTGCTACAAGAATTGGTGCCAGGATGCAATAAGATCACTGGAAAGGCAGTTATGCT TGATGAGATTATCAATTATGTCCAGTCTTTACAGCAGCAGGTTGAGTTCTTGTCGATGAAACTTGCTACTGTCAATCCAGATGTGAACATCGATATCGAG AGGATTCTTTCCAAAGACGTGAGCCAGTCAAGCCCAACACATGATGTGCATACTATTTTATTTCTTGGTCTGAGGATTGCTATTCTTTCATCTTATTTTA TGCAGCAGCTGCTTCATCCACACAGCAACAACTCATTGAATCTCGGATTTAATCCGCTGATGAATACACCCCATTTTCCAACAACCAGGAATTCCAGTCA TTCTCCAAAATTTTCCAACAACTAG
AA sequence Show only first row Show all	>Lus10006491 pacid=23141643 polypeptide=Lus10006491 locus=Lus10006491.g ID=Lus10006491.BGIv1.0 annot-version=v1.0 MGGNGGDLSYQHDMESQIRAAPSAMAANPFFASAWDPVVSLGQHESSVGSSTMCQNEFSHHQSFPMALDNQPGSDNSHLVHYPFDSGLVELVGNGNFSEM VGPFGLNECGQIPNPGLHPNFGSQTDQEDHPMSEGGVGASPDINKRKRVAGSTSPFDSNKKNAKGELDEDQSRENCDALKEGDDKKPRPGRIAGSNSQAA KQAKEESNNSGESAKDNYIHIRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNIDIE RILSKDVSQSSPTHDVHTILFLGLRIAILSSYFMQQLLHPHSNNSLNLGFNPLMNTPHFPTTRNSSHSPKFSNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Lus10006491 [exp]	0	1
AT5G16720			Protein of unknown function, D...		Lus10002289 [exp]	2.6	0.8542
AT1G22790			unknown protein		Lus10028691 [exp]	4.2	0.8097
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Lus10013115 [exp]	6.2	0.8108
AT4G31340			myosin heavy chain-related (.1...		Lus10036424 [exp]	8.7	0.8009
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10036149 [exp]	8.9	0.7991
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10007459 [exp]	9.6	0.7517
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10033291 [exp]	11.8	0.7778
AT5G40270			HD domain-containing metal-dep...		Lus10022228 [exp]	13.3	0.7824
AT1G61350			ARM repeat superfamily protein...		Lus10018423 [exp]	16.1	0.7565
AT2G48060			unknown protein		Lus10029973 [exp]	20.0	0.7571

Compare expression of checked genes

Lus10006491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.